Bombus vancouverensis nearcticus: 117154839
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Entry
117154839 CDS
T07628
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
bvan
Bombus vancouverensis nearcticus
Pathway
bvan03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bvan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117154839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bvan03041
]
117154839
Spliceosome [BR:
bvan03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
117154839
Complex C
U5 SnRNP specific factors
117154839
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
Ras
Motif
Other DBs
NCBI-GeneID:
117154839
NCBI-ProteinID:
XP_033186075
LinkDB
All DBs
Position
Unknown
AA seq
980 aa
AA seq
DB search
MDADLYDEFGNYIGPDLASDSEDENEYGNAGDDAEDRERSDEEMEEDRDEVREQSEQGNS
MAVVLHEDKRYYPSALEVYGPEVETLVQEEDAQPLDKPLIAPTRKPKFQIKQQQLPETTY
SIEFLADMMDAPHLIRNVVLLGHLHHGKTTLVDCLVRQTHPYLHSVTDEKPLRYTDTLFT
EQQRGVSTKATPVTLLLQDVKSKSYLLNIFDTPGHVNFSDEATAAIRLSDGAVLIVDAAE
GVMLNTERLLKHALQEKLALTVCINKIDRLILELKLPPLDAYYKLRHIIEEINGLIALYS
DSENPSFVSPAIGNVCFASSEYNVCFTLKSFAALYAKIHPSLNANEFSKRLWGDIYFNSK
TRKFTKKPPHNTAQRSFIEFILEPLYKIFAQVVGDVDTTLPDVLDELGIRLTSEEMKMNI
RPLLRLVCTRFLGDMCGLVDMCVAHVPSPQSHAPVKVQHVYTGSMDSSLAQDMINCDPDG
RLMIHSTKMYPTEDCTLFVVLGRVMSGTLEAGQRVRVLGEAYSRTDEEDSRVLTVGRLWI
SEARYSIELNRVPAGNWVLIEGIDRPIVKTSTITDLSNSDDLHIFRPLKFNTQSVIKIAV
EPVNPSELPKMLDGLRKVNKSYPLLGTRVEESGEHVVLGTGELYLDCAMHDLRRMYSEID
IKVADPVVAFAETVVETSSLKCFAETPNKRNKLTMIAEPLERGLAEDIEAEHVKITWNKK
RLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKTLLNSARDAIIQGFQW
GTREGPLCEEPIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYL
FVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQ
GQAFCLSVFHHWQIVPGDPLDKSITIRPLEPQPATHLAREFMLKTRRRKGLSEDVSINKF
FDDPMLLELARQDVLLNYPL
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atggatgcagatctatacgatgaatttggcaattatattggtcccgatttagcttctgat
agcgaagatgaaaatgaatatggaaatgctggagacgatgcagaagacagagaacgctcc
gatgaggaaatggaagaagacagagatgaagttagagagcaatcggagcaaggaaattcc
atggcagttgtattgcacgaagataaaagatattatccaagtgctttagaagtttatggg
ccagaggtagagacattggtacaagaagaagatgcacaaccattagataaaccactgata
gcaccaacacgaaaaccaaagtttcaaataaaacaacagcaactaccagagacaacgtat
agcatagaatttttagcagatatgatggatgcgcctcaccttatacgtaatgttgttcta
cttggtcacctacatcacggcaaaactactttagtcgattgtctagtgagacagacccac
ccctatcttcacagcgtaacagacgaaaaacctttaaggtataccgacacattattcacc
gagcaacagcgaggggtatcaacgaaagcaacacccgtgacgttgttactgcaagacgta
aaatcaaagtcctaccttttgaatatattcgatactccgggtcacgtaaatttttctgac
gaggcgacagcggcgatacgtttatccgatggagcggtgctgatcgtcgacgccgccgaa
ggcgtcatgttgaacacagaacgtttactaaaacacgcgcttcaggaaaaacttgcgtta
acagtttgtataaataagatagaccgactgatcctcgaattaaaattgccccccttagac
gcgtactataaattaagacatatcatcgaagaaattaatggactgatagcgctatattcg
gattctgaaaatccatctttcgtgtcacctgctatcggaaacgtgtgctttgcgagctcg
gagtacaacgtctgtttcaccctgaaatctttcgcggcgctttacgctaagatccatccc
tcgcttaacgccaatgaattttcgaaacgactatggggagatatatactttaattcgaaa
acacggaaatttacgaaaaaaccgccacacaataccgcacagcgcagctttatcgaattc
atactcgagccattgtacaagatcttcgcgcaagttgttggtgatgttgacacaacttta
cccgatgtgctggacgaattaggcataagactaacatcagaagaaatgaaaatgaatatt
agacctctgttgagattggtatgcacgcgtttcttgggagacatgtgcggattagtcgat
atgtgtgtagcccacgttcctagtcctcagtcacacgcaccagtcaaagttcaacacgtg
tacacaggttctatggattcgtctctcgcgcaggatatgatcaattgcgatcctgacggc
aggctaatgattcacagcacaaaaatgtatcctaccgaggactgtactctattcgtggtc
ctcggaagggtaatgtcaggtacactcgaggcaggacaacgtgtccgcgtattaggtgaa
gcgtactcgcgtaccgacgaagaagattctcgcgttctaaccgtgggaaggttgtggatc
agcgaggcacgctactcgatcgagttgaacagagttcccgcgggcaactgggtacttatc
gaaggtatagacaggccgatcgtaaaaacgagcaccattaccgatctcagtaattcagac
gacttacatatcttccgaccattgaagttcaatactcagagcgtgatcaaaatcgcggtc
gaacctgtcaatccatcagagttaccaaagatgttagacggcctgaggaaagtgaataaa
agttacccattgctgggcacgcgtgtcgaggaaagcggcgaacacgtggtcctaggtacc
ggtgaactgtacttggactgcgcgatgcacgacctgcgtcgtatgtattcggaaatcgat
ataaaagtagcagacccggtcgttgctttcgcggagacggtagtagaaacgagttctctc
aaatgtttcgccgagacacccaataaacggaacaagttgacgatgatcgccgaaccactc
gagagaggcctggccgaagacatcgaggcagaacatgttaaaatcacgtggaacaaaaaa
cgtctaggagaatttttccagacgaagtacgactgggatttattggcggcgcgaagcata
tgggcgtttggtccagacgccacgggtcctaatattctggtcgacgacactttgccatca
gaagtggacaagacgctattgaacagcgcccgtgacgccatcattcagggtttccagtgg
ggtacgcgagaaggtcctctctgcgaagaaccgattagaaacgtgaagttcaaaatcctg
gacgccgtgattgctcaagaacctcttcatcgaggaggtggtcagataattccgacggcc
agaagggtagcctattctgccttccttatggcaacgcccagattgatggaaccctacttg
ttcgtcgaagttcaagcgcctgcggattgcgtgtcagcagtttataccgtgctggctaaa
agaaggggccacgtgactcaagacgctcccgttcccggaagtcccttgtataccatcaaa
gcattcattccggcaatcgatagtttcggattcgagactgacctgcgaacccatacgcaa
ggtcaggcgttctgcctgtccgtattccatcattggcagatcgtgcctggcgatccatta
gataaaagcatcactattcgaccactggagccacagccagctacgcacttagctagagag
tttatgttgaagacaaggaggcggaagggactttcggaagacgtgtctatcaacaaattc
ttcgacgatcctatgttactggaattagcccgacaggacgttctattgaattacccgtta
taa
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