Bombus vancouverensis nearcticus: 117161936
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Entry
117161936 CDS
T07628
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
bvan
Bombus vancouverensis nearcticus
Pathway
bvan03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bvan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
117161936
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bvan03400
]
117161936
Enzymes [BR:
bvan01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
117161936
DNA repair and recombination proteins [BR:
bvan03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
117161936
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
BRCT
RNA_ligase
DNA_ligase_IV
BRCT_2
bPH_3
Motif
Other DBs
NCBI-GeneID:
117161936
NCBI-ProteinID:
XP_033199611
LinkDB
All DBs
Position
Unknown
AA seq
899 aa
AA seq
DB search
MSKMNGTLASKIEFVELCGIFEKISKPDTRKSRISRKADILEQFFQKCRNMGRELKTEYP
DMDLSLFPILRLILPNLEREREAYNLKEKSLADIYIRIFCFGKNSKDAIKLKQYKTPTAK
NITRCNFADKAYWVLQNRFQREGSHISIEQINFILDNLSLRRNETFKDLLRKLNALEFKW
ITRIILKSLDLGIGTKKILQVFHPDADSLFNVSSNLRQICDTLYDPQLRYHHDIQVFSHF
KPMLLEECQIENVEKLFNGRKQYFVQCKYDGERSQIHMKNGKYKYFTRQGYDITNKPGFG
ETTSAGFMSGVFGRLLNPQVKSVILDGELMGWHKERKLLGSKGMNYDVKKLSKDSPYQQC
FVAFDIIMHNDILLNNEPYEKRLEILKDVFKEEEGCLLLCKSTKVSRSEELCKIFNESIR
NKEEGIVVKECDSKYKPNVRNGTNCYKIKAEYSEGLVHDIDLIILGGYYGRKFMGLVNSF
LMGVASSTKTPGENPTKFLSVVSVNSGFSMNTLKELGRMFKDKWQTERPENVVPPKVEPN
LWIRPENSIILTIKASEMICSNNYPTGYSLRFPRVTSVRTDKPWYDVCTTDNLKLLIKDT
QPIQKLTKREIPYEDIEEARESKVRKTKKQRSIKYEEKSMKPNIYDNPPVHLTRLFDDKE
ICVINGVDELPKEQIEEILLQHRANVVQNPLKENYCIIVGNVKTVRASCIIQSKKYDVVT
LDWFRRVTKKENWSSLQDFLPWDLICSRESTKRRLAQYYDDYYDHYTIDADEESLLRSFK
KVEDTEQNVKFDYTEMKKIDQELFDSEISPYSLFRGIVAYFYDSSDLSKFEFRFMGGTIR
ETIDDSVTHIFINNNSTDIELQNLIDNKSQTSLTIIKSEWIGECFKQNTIIPYSVYLVQ
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaatgaatggaacattagctagtaaaattgaatttgtggaattgtgcggtata
ttcgagaaaatctctaaaccagatactaggaaatcacgaatatctaggaaagctgatatt
ttggagcagttctttcagaaatgtcgtaatatgggtcgtgaattaaaaactgagtatcca
gatatggatctttcactctttcctatattaagattaatcttaccaaatcttgaacgagaa
cgtgaggcatataatttaaaagaaaagtctcttgccgatatttatattcgtatattttgt
ttcgggaaaaacagtaaggatgcaattaaacttaaacagtacaaaactccaactgcaaaa
aatattacacgttgcaattttgcggataaagcttattgggttttacaaaatcgttttcaa
cgtgaaggttctcatatctcaatagaacaaatcaattttattctcgataatctatcgtta
agaagaaatgaaacgttcaaagatttattaaggaaattaaatgcattagagttcaaatgg
ataacacgaattattctaaaaagtttggatcttggtattggaacgaaaaagatattgcaa
gtttttcatccagatgcagattcattgtttaatgtatcatctaatttgcgacaaatttgt
gacacattatatgatcctcaattgagatatcatcatgatattcaagttttttctcatttt
aagcctatgttattagaagaatgtcaaattgagaatgtagagaaactttttaatggaaga
aaacaatactttgtgcaatgcaaatatgatggagagcgatctcaaatacatatgaaaaat
ggcaaatataagtattttacaagacaagggtatgatattacaaataagcctggttttggg
gaaactacttctgcaggttttatgagcggtgtatttggtcgattattaaatcctcaagta
aaatcagtcattttagacggtgaattaatgggttggcataaagaaaggaaattgttaggc
tcaaagggaatgaactatgatgttaagaaactctcaaaggatagtccttatcaacaatgt
tttgttgcattcgatattattatgcataatgatattttacttaataacgaaccttatgaa
aaaagacttgaaattttaaaagatgtatttaaagaggaagaaggttgccttttattatgt
aaatctactaaagtttctagaagcgaggaattatgtaaaatattcaatgaaagtattagg
aataaagaagaaggaattgtagtaaaagaatgtgatagtaaatataaaccaaatgtacga
aatggtactaattgttataaaataaaagctgagtattctgaaggtttggtacacgatata
gatttaattattctcggtggttattacggtagaaaatttatgggtttagtaaatagcttt
ttaatgggcgtagcttcttctacaaaaactcctggtgaaaatcctacaaaatttttatct
gtagtatcagtcaacagtggtttttctatgaatacattgaaagaactcggaagaatgttt
aaagataagtggcaaacagaacgacctgaaaatgtcgtgcctcccaaggttgagccaaat
ttatggattcgtcctgaaaattctatcattttgaccataaaagcatcggaaatgatatgt
agtaataattatccaaccggatacagtttacgatttcctagagttacaagtgttagaact
gataaaccgtggtatgacgtttgtacaactgataacttgaaattattaattaaggatacg
caaccaattcagaaattaacaaaacgagaaataccttatgaagatatagaagaagcacgt
gaaagtaaagtacgtaagacaaagaaacaacgttcaataaaatatgaagagaaatcaatg
aaaccaaacatttatgacaatccaccggttcatcttactcgactttttgacgacaaagaa
atttgcgtgataaatggcgtcgatgagttacctaaagaacagattgaagaaatacttctg
caacacagagcaaatgttgtacaaaatcctttaaaggaaaattactgtattattgttggt
aacgttaaaacggtaagagcaagttgcatcatacaaagtaaaaagtatgatgtggtaaca
ttggattggtttagacgggttaccaaaaaagaaaattggtcgtcattacaagatttttta
ccatgggatttgatatgtagtcgtgaatcaacgaaacgacgattagcacaatattatgat
gattattatgatcactatactatagatgctgacgaagagagtttattacgttcgttcaaa
aaagtcgaagatacggagcaaaatgttaaatttgattatacagaaatgaaaaaaatagat
caagaattatttgatagtgaaatatcaccttattctctatttcgtggtatcgtggcatat
ttttatgactcatcagatttatcaaaatttgaatttcgttttatgggtggtactattaga
gaaactattgacgattctgtgacacatatttttatcaataataattccaccgatattgaa
ctccaaaatttaattgacaataaatcccagacatcgttaacaattattaaaagcgaatgg
atcggagagtgctttaaacaaaatacaattattccttattctgtatacctggtccaataa
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