Beta vulgaris (sugar beet): 104888575
Help
Entry
104888575 CDS
T03548
Name
(RefSeq) uncharacterized LOC104888575
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
bvg
Beta vulgaris (sugar beet)
Brite
KEGG Orthology (KO) [BR:
bvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bvg03036
]
104888575
03400 DNA repair and recombination proteins [BR:
bvg03400
]
104888575
Chromosome and associated proteins [BR:
bvg03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
104888575
DNA repair and recombination proteins [BR:
bvg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
104888575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HATPase_c_3
SMCHD1_S5
HATPase_c
Motif
Other DBs
NCBI-GeneID:
104888575
NCBI-ProteinID:
XP_010671900
LinkDB
All DBs
Position
3:3797797..3818426
Genome browser
AA seq
1681 aa
AA seq
DB search
MIEKKRKFHSDNEDKIYRFQVLLPNGISVKMVKRNPKDSSISLDVFVEIVKEKCYEILRQ
TEDFKNRRKIFWNSKELYLEDSKGFKIRSLLCYDKFKPNKTHYLRLFDGGANTVDTFENM
WDLTPDTDLLTELPEDYTFETALADLIDNSLQAVWSNGDGERKLISVEVYEDKISVFDTG
PGMDGSDENSIVKWGKMGASVHRTSKKLAIGGKPPYLTPFFGMFGYGGTIASMHLGRHAV
VSAKTKQSKKVYWLRLERDALLRQSGSDLNWKASGGLRDPSDREIELSPHGSFTKIVMKP
KLELPDIFQLQCKLKDIYFPYIQCDEISKTGRTTILVDFEINGINLAEVEGGEVAVTNLH
SSNGPDFVLNLHFSFEEDKAASKSPTIREGNARLKCVYFPNLEGKESIDKILEKLNSDGC
RIQEDYESFSRISIRRLGRLLPEARWDLLPFMKPRQKKGSKVETLKRCCPRVKCFIDTDA
GFNPIPSKTDLAPHDRFTKALKDLGGHTPQKEKVKVRICRGEKQLTLQQLEQEYQNWILQ
MHSQYDNEYEINCGDEKPDVLVAESIKELGITCDVVRVLKAISWKGRSWNRGQKVKILKG
ACSGCHKNNLFATLEYFLLEGLEEDTGGEARIICRPLGVEEEDGSVLKVDATNRSLELRG
SISLPIVVMDPGKCIPVSDNDWNCQVDKLNLKLPSSIDVLGPKQCEALEIDGGLLTDASV
SAGTVPPKEVVAVLRPSNFTRSSASNDLDQKYIVRDNYEMCLDIKFKTEAAKCPKVDHIF
SGTVTNTSRNGRQGLYIFLVGSIPSLFQKAGVYSFSFSLKKSATASSELIVRVKASSNIK
RWELSKDDLKLPLRVSLQNVRITTNKLDNIRPSYEAMLVLSQPHKQPFLSIPCQVFPGPL
RFVNILSSESSKSLLPKQVVEDLKVEVLDRHSNHVQQGIEVELQVHGFSFLDQIGLKRKV
DDHGFIDLSGLLKVTEGFGKLVSLTVICNKNVVANKKFQVEKRELKMVTVVPKLCHLGSK
LKNLAFEVVNSKGDVDHTIHDSYKHGRSDTLRLKTDFPGFDDSLRYAFKLGRCVIPSITL
PLTEGTFCIEANHCQHLELCAKFEIRVSRSTSTEKDTLSDLRASDQLYLKDRSASGSVSD
AIKPVTNRKRSALRDSEVTVPYVEECDFASPLQTQNLEHGDRLPQSSYGKSTSGKLSILI
ESKMQKKQVTVPYVEEECDFASPLQTQNPEHGDCLPQSSDGKSTSGKLSILIESKMQKKQ
ANITQTPDKQPDQKYGLNSDIFNSPEGMMPFADTCTPERAIPSGGPGLEDFESIEEEIYH
YGSAIKDQEEALQWCLLRKDEIEEDLTQLQASMELLPVSQPDCSSQKEVVLGKIEEKVDS
AASIYGIVTRNPLLKNRHPDFIDDVVGLVALLATVSTPALSCSLAEYLGEDQMLAIVCQS
SVALTSPEKYEYILMSLAGELGKCIKNRQLIICLEDLKAYGGDILETDPQRRLALPNPIL
PEGTTPHGFLGYAVNMIDIDVDHLQTRTYAGHGLRETLFYRLFGELQVYDTKEHMKHARG
CITTDGAISLDGLIMRGRGIVSLGSSEKVSVHFPSVSQDSQLVVSSGEVMNEIEKRKSEL
CIVEKAIICESEKRCSYLKLFSEKKAGYLELLENKEREHKVLLSQQLSKKSPIASFKSSL
H
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atgattgagaaaaaaagaaaatttcatagtgacaatgaagataaaatttatcgttttcaa
gttttgctgccaaatgggattagtgttaaaatggttaaaagaaacccaaaagatagtagt
atttctttggatgtttttgtggagattgttaaggagaaatgctatgaaattttgaggcaa
acagaggattttaaaaataggaggaagattttctggaattctaaggagttgtacttggaa
gatagtaaagggtttaaaataaggagtttattatgttatgataagttcaagcctaacaaa
actcactacttgagactttttgatggtggtgctaacactgttgatacctttgagaatatg
tgggacttgacaccagatacagatttgttgacagagcttccggaagactatacatttgag
acagccctagcagacttaattgataattctttgcaggcagtgtggtctaatggcgacggc
gaaaggaaactgataagtgttgaggtttacgaggataaaatttctgtatttgatactggc
cctggaatggatggaagtgatgagaattcgattgtgaagtggggaaaaatgggtgcttca
gttcacagaacttccaaaaagcttgcgattggcggaaaacctccatatcttacacctttc
tttgggatgtttggatatggtggaactattgcttctatgcatttagggaggcatgctgta
gtgtctgcaaagactaaacaatccaaaaaagtttactggcttcgtttagagagggatgct
ctactaaggcagtctggctctgatcttaactggaaggcctcgggtggacttcgagatccg
tcagacagagaaattgaattatcccctcatggaagttttacaaagattgttatgaaaccc
aagttagaactccctgatatatttcaactccagtgcaagcttaaggatatatatttccct
tatattcagtgtgatgagatatccaagacagggaggactacaatattggtggattttgag
ataaatggcatcaatttagctgaagttgaaggtggtgaagtcgcagtgacaaatctgcat
tcttctaatggccctgactttgtcctgaatcttcacttttcttttgaagaggataaggct
gcgtctaaatcaccaacaattcgagaagggaatgcacgcctgaagtgcgtttactttccc
aatcttgagggcaaggagagtattgacaaaattttggaaaaacttaattcggatggctgt
agaattcaagaagactatgaatcttttagtcgtatttccatcaggcggttgggccgtctt
cttcctgaagctcgctgggatctgctacctttcatgaaacccagacagaagaaggggagc
aaagttgaaactttgaagaggtgttgtccaagagttaagtgcttcattgatactgatgct
ggtttcaatccaataccatccaagactgatctagcccctcatgatcggtttaccaaagca
ttgaaggatctgggaggtcacactcctcagaaagagaaagtaaaagtccgaatatgtaga
ggcgaaaagcaattgacacttcaacaactggagcaagagtatcaaaactggattctacaa
atgcatagtcagtatgataatgaatacgaaatcaactgtggtgatgaaaaacctgatgtt
cttgttgctgaatcaatcaaagaacttggcataacttgtgatgttgttagggttcttaaa
gctataagttggaagggcagatcttggaataggggacagaaagttaagattctcaaaggt
gcttgttctggctgtcataagaacaacctatttgcaacgctcgaatattttttacttgaa
ggccttgaagaggatacaggaggagaggcgcggatcatttgcaggccactaggggttgag
gaggaagatggtagtgtgcttaaagttgatgctactaacagaagcttggaactccgcggc
tctatatctctgcctattgttgtgatggatccaggaaagtgtattcctgttagcgacaac
gactggaattgccaagttgacaagctaaatctgaaacttccttcgtcaatcgatgtgctg
ggaccaaagcaatgcgaagccttagaaattgatgggggattacttacagatgcttcagtt
tctgctggaacagtacctcctaaagaagttgttgccgtactgcggccttccaatttcact
cgaagtagtgcctctaatgatctagaccaaaaatacattgtaagggacaattacgagatg
tgcctggatattaaatttaagactgaagctgcaaagtgccccaaggtggaccatattttt
tcaggaactgttacaaatacatcacgtaacggacgtcagggtttgtatatatttttggtg
ggctcaatcccaagcttgtttcaaaaagctggggtttattcattctccttctctctgaaa
aaatctgcaactgcaagttctgaattgattgtgagggtgaaagcatcatctaatatcaaa
cgctgggaactctccaaggatgatttaaaactacctttgcgtgtgagtttgcagaatgtg
cggattacaactaataagttagacaatatccgcccaagttatgaagccatgttggtgtta
tctcagcctcataagcaaccctttctcagcataccttgtcaagtgtttcctggacctcta
cgatttgtcaacattctttcatcagaatcaagcaaaagtttacttccgaagcaggtcgtt
gaggatttgaaagtggaggtgttagatagacatagtaatcatgtgcaacaaggcatagaa
gtagagctgcaagttcatggtttttctttcttggatcaaattggtctgaagcgcaaggtt
gatgatcatggtttcattgatcttagcggtcttttgaaagtcacagaaggttttggtaaa
ttagtgtctcttactgttatatgcaacaaaaatgttgtagctaataaaaaatttcaagtc
gaaaagcgggagctgaagatggtgacagtggtacctaagctttgtcatttggggtcgaag
ttgaagaatttagcctttgaagttgttaattctaagggtgatgttgatcacactatacat
gactcatacaagcatggcagatcagatactttaagattaaaaacagactttccaggcttt
gatgattctttaagatatgcttttaagctggggagatgtgtcattccgtcaattactctt
cctttaacagaaggaactttctgcattgaggccaatcattgtcaacacctagagctatgt
gccaagtttgagattagagtatcaagatcaacaagtacggaaaaagataccctttctgat
ctccgggcttcagatcagctgtatttgaaggatagatctgcttccggatcagtttccgat
gctataaagcctgtgacaaacaggaagaggtctgcattgcgagattcagaggttactgtt
ccatatgttgaggagtgtgattttgcatctcccctccaaactcaaaatctggagcatgga
gatcgtctacctcagtcgtcatatggaaaatcaacatctgggaaattgtccattttgatt
gagtcaaaaatgcaaaagaagcaggttactgttccatatgttgaggaggagtgtgatttt
gcatctcccctccaaactcaaaatccggagcatggagattgcctacctcagtcgtcagat
gggaaatcaacatctgggaaactgtccattttgatcgagtcaaaaatgcaaaagaagcag
gctaacattacacaaactccagacaagcagcctgatcaaaagtacgggcttaacagtgac
attttcaattctccagaagggatgatgccttttgctgatacttgtacacctgagcgtgca
ataccttcaggaggacctggcttagaggactttgagagcattgaagaagagatctaccat
tatggttcagctattaaagatcaagaagaggccttacaatggtgtcttctgcgtaaggat
gaaattgaagaggatttgacacagctacaagcttcaatggaactgctgccagtatctcag
ccagattgctcgtctcagaaggaggtggtgctgggaaaaatagaagagaaggttgattca
gcggcttccatttatggcattgttaccaggaatccattattgaagaatcggcaccctgat
ttcattgacgatgtggttggcctagttgcccttcttgcgacagtttccacacccgcgctt
agttgttcattggccgagtacttgggggaagatcaaatgctagccattgtttgtcaatct
agtgttgcactaacaagccctgagaagtacgaatacattctaatgtccttagcaggcgaa
ttgggaaaatgcataaaaaatcgtcaactaattatatgtcttgaagatttaaaagcatat
gggggtgacattctggagactgatcctcaaagaaggctggccttaccaaatcccatctta
cctgagggaacaactccacatggtttcttaggttatgctgttaatatgatcgacattgat
gtggaccatctccaaactaggacatatgcgggtcatggccttcgtgaaacccttttttat
cgactctttggagaacttcaagtgtatgatacgaaagaacacatgaaacatgctcgtgga
tgcataacaacagatggtgcaatatctctggatggactaatcatgagaggaagaggaatt
gtttctctaggatcatctgagaaagtgagcgtgcattttcctagcgtctctcaagatagt
caattggttgtctcttcgggggaggtcatgaacgagatagagaaaaggaaatcggagtta
tgcatagtggagaaagcaatcatttgcgaaagtgaaaaaaggtgttcatacttaaagctc
ttttctgagaagaaggctgggtatctggagttacttgagaacaaagaaagagaacataag
gttttgttatcacaacaattatccaagaaaagtcctattgcttccttcaaaagttcttta
cattag
DBGET
integrated database retrieval system