Beta vulgaris (sugar beet): 104890966
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Entry
104890966 CDS
T03548
Name
(RefSeq) 5'-3' exoribonuclease 4
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
bvg
Beta vulgaris (sugar beet)
Pathway
bvg04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
bvg00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
104890966
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvg03019
]
104890966
Messenger RNA biogenesis [BR:
bvg03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
104890966
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC_5
zf-CCHC
KIF1B
Motif
Other DBs
NCBI-GeneID:
104890966
NCBI-ProteinID:
XP_010674889
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All DBs
Position
4:complement(13666618..13681859)
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AA seq
930 aa
AA seq
DB search
MGVPAFYRWLADRYPLAISNVVEEKSMEGEPVDISNPNPNGMEFDNLYLDMNGIIHPCFH
PDGKPAPATYDDVFKTIFAYIDHIISLVRPRKVLYMAIDGVAPRAKMNQQRSRRFRAAKD
AAEAEAEEERLRKDFEAEGRTLATKERRETSDSNVITPGTEFMYVLSVALQYYVQKRLNN
HAGWRRMKVILSDANVPGEGEHKIMSYIRLQRDQPGFDPNTRHCLYGLDADLIMLALATH
EVHFSILREVVTLPSQQEKCFLCGQGGHLAADCRAKPDENGKLVDDTPVYKKKYQFLNIW
VLREYLQYDLEIPDAPFPTNFERLIDDFVFLCFFVGNDFLPHMPTLEIREGAINLLMHVY
RKEFAATGGYLTDSGEVFLDKVEHFVQSVAVHEEQIFQKRVRMQQMYENNEEMKNKAKRE
SREPFEEPQPPAEDKIKLGEPGYKERYYAEKFGATTQDEIDKIRKDVVLKYIEGLCWVCR
YYYQGVCSWQWFYPYHYAPFASDLKDLVDLEITFFLGEPFKPFDQLLGTLPAASSDALPQ
MYRNLMTDPSSPLVDFYPSDFDIDMNGKRFAWQGVAKLPFIDEKKLLAETNKLQETLTVE
EQHRNTVMFDMLYVHPAHPMGSQIVSYYHFYYQTPPNQRYAWPIDSYASVGMNGYLWLSE
RNGWRQVVPSPVYGLPDITNNLALNVTYLNPLPHKHISEPPKGVNMPAKVVKYTDVKPFP
ALWHEDNGNRRNFGRGRPQVPGTIRGPQLGEAAHRLLKNTLNIKHADSSPGLLEYMPHPN
HPGNPLFNRPRPAGPSGYERGYYDDSNYYNGQHHMPRPMSNGHRPPYESRGSRHNDRDLG
AAMSNLTLGGIRNRPPAMMRSRNQNTGPTPMPNQQNSYVQNVGQLPSPPMNWINRPEAGN
NMHFRQQQMSSQKQLRPLYQAKTQRPTQQE
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttccggcattctacagatggttagctgatcgttacccattagcaatttccaac
gttgttgaagagaaatcaatggagggtgaaccagttgatatttcaaatcctaatcccaat
ggaatggagtttgataatttatacttggatatgaatggaattattcatccttgttttcat
cctgatggaaagcctgcacctgcaacttatgatgatgtattcaaaacaatttttgcttac
attgatcatataatctcattggttcgtccaaggaaggttctctacatggcaattgatgga
gttgcaccaagagctaaaatgaatcagcaacgttcaaggcgcttcagagctgcaaaagat
gctgcagaggctgaagcagaggaggagagactgaggaaagattttgaggctgaaggaaga
actctagccactaaagaaagacgagaaacaagcgactcaaatgtcattactcctggtaca
gaatttatgtatgtgctctcagtggcacttcagtattatgtacagaagagattgaacaac
cacgctggctggcggaggatgaaggttattctatctgatgctaatgtacccggcgaagga
gaacataaaatcatgtcgtacattcggttgcaaagagatcagcctggttttgatcctaat
actcgacattgcctgtatggattggatgctgatttgataatgttggctttggccacacat
gaggtgcacttttcaattctgagagaggttgtcactctgccttcacagcaggagaaatgt
tttctttgtggccaaggtggtcatctggcagctgattgtcgtgctaagcctgatgaaaat
ggaaaattggtagatgatacccctgtttacaagaaaaaatatcagttcctcaacatatgg
gtattaagagaatatctacaatatgacctggagattcctgatgcaccttttcctacaaat
tttgaacggttaattgatgattttgtgttcctgtgtttctttgttggcaatgacttcctt
ccgcatatgcctacattagaaatacgagagggtgctataaacctgttgatgcatgtatac
agaaaagaatttgcagctacaggtggttatctgactgattctggtgaagtctttctagat
aaagtggaacattttgttcaatcagttgctgttcatgaagaacaaatcttccagaaacgg
gttcgcatgcagcagatgtatgagaacaatgaggagatgaagaacaaggcaaaacgagaa
tcaagagaaccttttgaagagccacagcctccagcggaagacaagatcaaacttggggag
cccgggtataaagagaggtattatgcagagaaatttggtgcaacaactcaggatgaaatt
gacaaaattaggaaagatgtggtcttgaagtacatagaaggtttatgttgggtttgccgt
tactactaccaaggtgtttgctcatggcagtggttctatccgtaccattatgctccgttt
gcctctgatctgaaagatttagttgatttggaaatcacctttttcttgggagagccattt
aagccttttgatcaactcttgggaactctaccagctgcaagttccgatgctttgccacag
atgtacaggaacttgatgacagacccatcatcacctctggttgatttttatccgtctgat
tttgatatcgatatgaatggtaaacgcttcgcttggcagggtgtggcaaagttaccattc
atcgatgaaaagaaattgcttgctgaaactaataaacttcaagaaactttgacggtagaa
gagcagcatcggaatactgtgatgtttgatatgttatatgtccaccctgctcatcctatg
ggttctcaaattgtttcatattaccatttctactatcagacgcctcctaaccaaagatat
gcttggccaattgacagctatgctagtgttgggatgaatggttatttatggttatctgag
aggaatggatggaggcaagtggtcccttccccagtatatgggctaccagatattacgaac
aatctagctttgaatgtaacatacttgaatcccctgcctcataaacacatttcagagcct
ccaaagggtgttaacatgccagctaaggtggtaaaatatactgacgtgaaacctttcccc
gcattatggcatgaagacaatggcaataggcgtaattttggacgtggaaggcctcaagta
ccaggaacaatacgtgggccacaattgggggaagctgctcaccgccttctcaaaaacacg
ttgaatattaaacatgctgattcatctcctggattattggaatatatgccccatccaaat
catccaggaaaccctttgtttaataggccaaggccagctggaccttcggggtacgaaaga
ggttactatgatgatagcaattactataatgggcagcatcatatgccccgacccatgtca
aatggccacaggccaccctatgagtcacgtggaagtagacacaatgaccgcgatttggga
gcagctatgtcgaatttgacactaggagggattaggaatagaccaccagcaatgatgaga
tcaaggaaccaaaatactgggccaacacccatgcccaatcaacaaaacagctatgtccaa
aatgttggtcagcttccatcaccgcctatgaattggattaatagaccagaagctggaaat
aacatgcatttccggcagcagcagatgtcatcgcaaaagcagctcaggccattgtaccaa
gctaagacacaacgaccaacacagcaagaataa
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