Brevundimonas vitisensis: JIP62_14135
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Entry
JIP62_14135 CDS
T07812
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bvit
Brevundimonas vitisensis
Pathway
bvit03030
DNA replication
bvit03410
Base excision repair
bvit03420
Nucleotide excision repair
bvit03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bvit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JIP62_14135 (ligA)
03410 Base excision repair
JIP62_14135 (ligA)
03420 Nucleotide excision repair
JIP62_14135 (ligA)
03430 Mismatch repair
JIP62_14135 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bvit03032
]
JIP62_14135 (ligA)
03400 DNA repair and recombination proteins [BR:
bvit03400
]
JIP62_14135 (ligA)
Enzymes [BR:
bvit01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JIP62_14135 (ligA)
DNA replication proteins [BR:
bvit03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JIP62_14135 (ligA)
DNA repair and recombination proteins [BR:
bvit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JIP62_14135 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JIP62_14135 (ligA)
MMR (mismatch excision repair)
DNA ligase
JIP62_14135 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JIP62_14135 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
Nlig-Ia
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
QQQ18412
LinkDB
All DBs
Position
complement(2809158..2811497)
Genome browser
AA seq
779 aa
AA seq
DB search
MPLTSVADLSPTEAEAEFARLNAELARHDALYHAQDAPEISDADYDALKRRALDIEARFP
ELTTTDSASQVVGAAASAQFAPVRHGVPMLSLDNAFDDGEAADFVARIGRFLKLPGQDPI
AFVAEPKIDGLSASLRYENGRLVRGATRGDGRTGEDVTANLRTLDDIPEELAGSGWPAVI
EIRGEVYAPNDAFDAFNAAAEAAGQRTYANPRNFAAGSLRQKDPAITATRPLRFFAYAWG
EVSEPFAQTQGEALEAFRRWGLSVNDRSVRVEGVGGLLDVYRGLEADRARLGYDIDGVVY
KVDRLDWQARLGFVARTPRWAIAHKFPAQQASTVLEGIDIQVGRTGSHTPVARLHPVTVG
GVVVRNATLHNADEIARKDVRIGDTVILQRAGDVIPQILGVVDADRPGRGAPYAFPSHCE
CPLKTPLEKETTASGVESVVRRCTGELACPFQRIEHLKHFVSRRAFDIEGLGEKQIIAFH
ERGWLAEPADIFRLARDKDRLDALRTEEGYGETSVANLVAGIDARRTIALDRFIYGLGVR
DIGEQTSIVLARAFETWPAFQAACIAASEGIASDAWVRLSEAHAVSARVIAALAAAEPAS
EDPWPEAPLDQKIALAFPGLASPARRGLATLAQDWTGLVELARVARLEGPSETLGQIAGV
SGVGPVAARALAVFFREPHNRARVEALVAELDRIEDAERPKSDTAVAGKTVVFTGALERF
TRDEAKARAESLGAKVSGSVSKKTDYLVAGPGAGSKLADAQKHGVQVLTEDEWLALIGG
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atgcccctgacctctgtcgccgatctcagccctaccgaggccgaggccgagttcgcccgg
ctgaacgccgaactggctcgccacgacgccctctatcatgcccaggacgcgcccgagatt
tcggatgccgactatgacgccctcaagcggcgcgcgctggatatcgaagcccgtttcccg
gaactgaccaccaccgattcggcatcccaggtcgtcggggctgccgcttcggcccaattt
gcgccggtgcgacacggcgtgcccatgctgtcgctggacaatgcctttgacgacggcgag
gcggcggatttcgtcgcccgcatcggccggttcctgaaactgccgggccaggaccccatc
gccttcgtcgccgagcccaagatcgacggcctgtcggccagtctgcgctatgagaacggt
cggctggtgcgcggagcgacccgtggcgacggcaggacgggcgaggacgtcaccgccaac
ctgcggaccctcgacgatatcccggaagaattggcgggctccggctggcccgccgtgatc
gagatccggggcgaggtctatgcccccaacgacgccttcgacgccttcaatgctgcggcc
gaggcggcgggccagcgcacctatgccaaccctcgcaatttcgccgccgggtcgctgcgg
cagaaggatccggccatcacggccactcgcccgctgcgctttttcgcctatgcctgggga
gaagtgtccgaaccctttgcccagactcaaggcgaggctctggaggcctttcggcgttgg
ggcctgtcggtcaacgaccgctcggtccgggtagagggcgtcggcggcctgctcgacgtc
tatcgtgggctggaggccgatcgcgcgcgcctcggctacgacatcgatggcgtcgtctat
aaggtcgatcggctggactggcaggcgcgcctgggcttcgtggcccgcacgccccgctgg
gccatcgcccacaaatttccagcccaacaggccagcaccgttctggaaggcatcgacatc
caggtagggcggaccggctcgcacaccccggtcgcgcgtctgcaccctgtcacggtgggc
ggggtcgtcgtccgcaacgccaccctgcacaacgccgatgaaatcgcccgcaaggatgtc
cgcatcggcgacaccgtcatcctgcagcgcgccggtgacgtgatcccgcagattctgggc
gtggtggatgctgaccggcctggccggggtgcaccctatgcttttcccagccattgcgaa
tgtccgctgaagaccccgctggaaaaggagaccacggcctcgggcgtcgaatcggtcgtg
cgccgctgcacgggcgaactggcctgccccttccagcggatcgaacacctcaaacatttc
gtcagccgccgtgccttcgacatcgaaggactgggcgaaaagcagatcatcgccttccac
gagcgcggctggctggccgaacccgccgacattttccgcctggcccgcgacaaggaccgg
ctggatgccctgcggaccgaagagggctatggcgagaccagtgtggccaatctggtcgcc
gggatcgacgcccgccggacgattgccctggaccgcttcatctatggcctgggcgtgcgc
gacatcggcgaacagacctcgatcgtgctggcccgtgcctttgagacctggcccgccttc
caggccgcctgcatcgccgcgtccgaagggatcgccagcgacgcctgggtccgcctgtcg
gaagcgcacgctgtatcggcccgcgtgatcgccgccctggccgcggcagagccggcaagc
gaggacccctggcccgaggccccgctggatcagaagatcgccctcgccttccccggcctg
gcgtctccggcgcggcggggtctagcgaccctggcccaggactggaccgggctggtcgaa
ctggcccgcgtggcccgcctggaggggccatccgaaaccttgggccagatcgcgggcgtt
tccggcgtcggcccggtcgcggcccgggctctggccgtgttctttcgcgagccgcacaac
cgcgcgcgcgtcgaggccctggtagccgaactggaccggatcgaggacgccgaacgcccc
aagtcggacactgccgtggccggaaagaccgtcgtctttaccggggccctggagcgattc
acccgcgatgaagccaaggcacgcgccgaaagcctgggtgcaaaggtctccggatcggta
tcaaagaagactgactatctggtcgccggccccggcgcaggatccaagctggcggacgct
cagaaacacggcgtccaagtcctgaccgaggacgagtggctggccctgatcggcggttag
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