Heyndrickxia vini: I5776_19295
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Entry
I5776_19295 CDS
T07201
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bvj
Heyndrickxia vini
Pathway
bvj03030
DNA replication
bvj03410
Base excision repair
bvj03420
Nucleotide excision repair
bvj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bvj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I5776_19295 (ligA)
03410 Base excision repair
I5776_19295 (ligA)
03420 Nucleotide excision repair
I5776_19295 (ligA)
03430 Mismatch repair
I5776_19295 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bvj03032
]
I5776_19295 (ligA)
03400 DNA repair and recombination proteins [BR:
bvj03400
]
I5776_19295 (ligA)
Enzymes [BR:
bvj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
I5776_19295 (ligA)
DNA replication proteins [BR:
bvj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
I5776_19295 (ligA)
DNA repair and recombination proteins [BR:
bvj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
I5776_19295 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
I5776_19295 (ligA)
MMR (mismatch excision repair)
DNA ligase
I5776_19295 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
I5776_19295 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
RNA_pol_A_CTD
HHH_3
Rab_bind
5_3_exonuc
HHH_8
Motif
Other DBs
NCBI-ProteinID:
QQZ09099
LinkDB
All DBs
Position
complement(3887735..3889741)
Genome browser
AA seq
668 aa
AA seq
DB search
MEKKDAEKRIKELHNLLNQYNYEYHVLDHPSVPDAEYDQLMRELTNIEEQFPELISPDSP
TQRVGGEILSAFQKVEHHIPMLSLGNAFNENDLRDFDRKVKQVVGDEVEYVCELKIDGLA
ISLRYESGLFIQGATRGDGTIGEDITANLKTIRSIPLRINQPMSIEVRGEAYMPKKSFEQ
LNKAKEENGEEPFANPRNAAAGSLRQLDPRIAASRNLDIFLYAIGDFSETGVTTQHDGLN
LLGTLGFKVNKEREKCANIDEVLQYVQKWIEKRPNLPYEIDGIVIKVNSFEQQNSLGFTA
KSPRWAIAYKFPAEEVVTKLHDIELSVGRTGVITPTAILDPVRVAGTKVQRASLHNEDLI
REKDIKLGDYVVIKKAGDIIPEVVNVLVERRTGEEKEFMMPTHCPDCESELVRLEGEVAL
RCINPKCPAQIREGLIHFVSRNAMNIDGLGEKVISQLFSHELIHDVADIYRLQQEQLLAL
ERMGEKSVSNLLAAIESSKTNSLEKLLFGLGIRHVGAKAAKTLAQKFGNMDALAAATKEE
LTAIQDIGEKMADSIVTYFENEEAGELIQELKTAGLNMEYKGPMPVETESISSIFAGKIV
VLTGKLEKLTRNEAKEKLEALGASVTGSVSKKTDLVIAGADAGSKLTKANELGIEVWDEE
KMLEEFNH
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaaaggatgccgaaaaacgaataaaggaacttcataatctgctgaatcaatat
aattacgaatatcatgtattggatcatccatcagttcccgatgctgaatatgatcagtta
atgagagagctaaccaatattgaagagcaatttccggaattgatttcccccgactctccg
acccaacgtgtcggtggagaaattctctcagcatttcaaaaagttgaacatcatatccca
atgcttagcttaggaaatgcatttaatgaaaatgatcttcgtgattttgatcgtaaagta
aagcaagtggttggtgatgaggttgaatatgtttgtgaattaaagattgatggattagcg
atttcacttcgttatgaaagcgggctatttattcagggtgccacaagaggtgacggaacc
attggggaagatatcaccgcaaatttaaaaacgattcgatcaatcccacttagaattaac
caaccgatgtcaatcgaggtccgcggcgaagcatatatgccgaaaaagtcgtttgaacaa
ttaaataaagcgaaagaagaaaatggggaagaaccatttgcaaatccacgaaatgctgca
gcggggtcattgcgccaattggatccacgaattgcagcttcaagaaacttagatattttc
ctttatgcaattggagattttagtgaaactggtgtcactacacaacatgacggattaaat
ttgttaggtacacttggctttaaggtgaacaaggaaagagaaaaatgtgcaaatattgat
gaggttctccagtatgtacaaaaatggatagaaaagcgcccaaatctgccatatgaaatc
gacggaatcgtcattaaagtgaattcgtttgaacaacaaaattcccttggatttacagca
aaaagtccaagatgggccattgcttacaagtttcccgcagaagaagtcgtaactaagctt
catgatattgaattaagtgttggacgcaccggagtaatcacaccgactgcaatacttgac
ccagttcgcgttgccggcacaaaagttcaaagggcatctttgcataatgaagatttaatt
cgcgagaaagatatcaaacttggcgattatgttgtcattaaaaaggcaggagatatcatt
cctgaagtcgttaatgtgttagttgaaagacgtacaggtgaagaaaaggaatttatgatg
ccgacacattgccctgattgtgaaagcgaacttgttcgattagaaggggaagtggcctta
cgttgcatcaatccgaaatgtcctgcccaaatacgagaaggattgattcattttgtctca
aggaacgccatgaatattgatggtctaggagagaaagtgattagtcaattattttctcat
gaacttattcatgatgtggcagatatttatcgtttacagcaggaacaactgttagcatta
gaacggatgggtgaaaaatctgtttctaatctactagcagcaattgaaagctctaaaaca
aattcattagaaaagctcctttttgggcttggtattcgccatgttggcgcaaaagcggct
aaaacattggcgcaaaagtttggaaatatggatgcattagcagctgcaacgaaggaagaa
cttacagccatccaggatattggtgaaaaaatggccgattctatcgttacctattttgag
aatgaagaggcaggtgaactcattcaggaattgaaaactgccggtttaaatatggaatat
aaaggtcctatgcctgttgaaacggaatcgatttcctctatctttgccggaaaaatcgtt
gttctaaccggtaaactggaaaagcttacaagaaatgaagcaaaagaaaaacttgaagct
ttaggagctagtgttaccggaagtgtaagtaaaaaaacagatttggttattgcgggtgcc
gatgcaggctcgaaattgacgaaagcaaatgagcttggtatcgaggtttgggacgaagaa
aaaatgcttgaagaatttaatcattaa
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