Brucella vulpis: BF3285c1_0017
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Entry
BF3285c1_0017 CDS
T04257
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bvl
Brucella vulpis
Pathway
bvl03030
DNA replication
bvl03410
Base excision repair
bvl03420
Nucleotide excision repair
bvl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bvl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BF3285c1_0017 (ligA)
03410 Base excision repair
BF3285c1_0017 (ligA)
03420 Nucleotide excision repair
BF3285c1_0017 (ligA)
03430 Mismatch repair
BF3285c1_0017 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bvl03032
]
BF3285c1_0017 (ligA)
03400 DNA repair and recombination proteins [BR:
bvl03400
]
BF3285c1_0017 (ligA)
Enzymes [BR:
bvl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BF3285c1_0017 (ligA)
DNA replication proteins [BR:
bvl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BF3285c1_0017 (ligA)
DNA repair and recombination proteins [BR:
bvl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BF3285c1_0017 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BF3285c1_0017 (ligA)
MMR (mismatch excision repair)
DNA ligase
BF3285c1_0017 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BF3285c1_0017 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
CUW42722
LinkDB
All DBs
Position
1:complement(14644..16803)
Genome browser
AA seq
719 aa
AA seq
DB search
MSDISVEKLTELEAAAELERLARAIAHHDELYHAKDSPEISDAAYDALKRRNEAIEAHFP
ALIRDDSPSRRVGAAPALATFAPVVHARPMLSLDNAFSDEDVRDFVGSVYRFLGQLPDDS
IGFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPAVV
EVRGEVYMAKSDFLALNAQMDAEGKQAYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAWG
EMSDMPADTQLGMVEVFRQWGFPVNPLMKRFNSVDGLLAHYRAIGMERSTLDYDIDGVVY
KVDRLDLQTRLGFRSRSPRWAIAHKFPAEQALTILRGIDIQVGRTGALTPVARLEPITVG
GVVVTNATLHNEDYIKGIGQKGELIREGRDIRIGDSVIVQRAGDVIPQIVDVVLEKRSAD
AVPFQFPHECPVCGSHAVREEGEAVRRCTGGLICPAQAVERIRHFVSRNAFDIEGLGEKQ
VEFFFNAEDPALSIRSPADIFTLKKRQENSLTKLQNIEGFGATSVKKLYDAIDARREIAL
HRFLFGLGIRHVGEVNAKRLARAYLSYAAFEKAALEAVPPKEGDRTDKGREAWQDMLAVE
GIGSIVTEAVVDFYGEPHNREVLAALLDEVTPLDEEVRVATGSPVEGKTVVFTGSLERMS
RDEAKAMAERHGAKTAGSVSKKTDLVVAGPGAGSKLAKATELGIEVINEDDWFKLVGED
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatatttccgtcgagaaactgaccgaactcgaagctgccgccgaattggaacgg
ctggcgcgcgcgattgctcatcacgacgagctttatcacgccaaggacagtccggaaatt
tccgatgcggcttatgatgcgctgaagcggcgcaacgaggcgattgaagcgcactttccg
gcacttatccgcgatgacagcccgtcgcggcgtgtgggtgcggccccggcgcttgccacc
tttgcgcctgttgttcacgcgcggcccatgctgtcgctggataacgcctttagtgatgag
gacgtgcgtgattttgttggcagcgtctatcgctttctgggccaactgccagatgattcc
atcggctttaccgctgaaccgaagatcgatggactttccatgtcgatccgttacgagaat
ggaattctggttagcggtgcgacacgcggggatggcacaacgggcgagaatgtaacagcc
aatatccgtaccattgctgaaatcccgaacaggcttccggcaggtgcgcctgctgtcgtg
gaagtgcgcggcgaggtctatatggccaagagcgactttctggcgctcaatgcgcagatg
gatgcggagggcaagcaggcctatgtgaacccgcgcaacacggcggcaggttcgctgcgc
cagcttgacgcgaaggtgacggcaagccgcaagctcaggtttttcgcctatgcctggggc
gaaatgtcggacatgcctgcggatacgcaattgggcatggtcgaggtttttcgccaatgg
ggctttccggtcaatccgctgatgaagcggttcaacagcgtggatgggctgcttgcgcat
tatcgcgccatcggcatggagcgttccacgctcgattacgatatcgacggtgttgtttac
aaggtggaccggctcgacctgcaaacgcggcttggttttcgctcgcgcagcccgcgctgg
gcgattgcgcataaattcccggcggaacaggcgctcaccattttgcgcggcatcgatatt
caggtgggccgcactggcgcgctgacgccggttgcgcggctggagccgatcacggttggc
ggtgtggtcgtgaccaatgccacattgcacaatgaggactatatcaagggcatcggccag
aagggcgagctgatccgggaggggcgcgatatccgcatcggcgatagcgtgatcgtgcag
cgcgcaggcgatgtcattccgcagatcgtggatgtggtgcttgagaagcgctcggccgat
gctgtgccgttccaattcccgcatgaatgcccggtctgtggcagccatgccgtgcgcgag
gagggcgaggcagtacgccgctgtaccggcgggctgatctgccctgcgcaggcggtggaa
cgcatccgccattttgtgtcgcgcaatgccttcgacattgaggggcttggcgaaaagcag
gtcgagttcttcttcaatgcggaagatccagccctttccatccgctcgcccgccgatatt
ttcacactgaaaaagcggcaggaaaattcgctgaccaagcttcagaatatcgaaggcttc
ggcgcaacttcggtgaagaagctttatgatgctatcgatgcgcggcgcgagattgcactc
caccgctttctgtttggtcttggcatccgccatgtgggcgaggtgaatgccaagcgtctt
gcccgcgcctatctttcctatgccgcttttgagaaggcggcgctggaggctgtgccgcca
aaagaaggcgaccgcaccgacaagggccgcgaagcgtggcaggacatgctggccgtggag
gggatcggttccatcgtgacggaagctgtggtcgatttttatggcgagccgcataaccgc
gaagtgctggccgcacttcttgacgaagtaacaccgcttgatgaggaagtgcgcgtggcg
accggttcgcccgtcgagggcaagacggtggttttcaccggcagtctggagcgcatgtca
cgcgatgaagcgaaggccatggccgagcgccatggcgcgaagacggcaggctctgtctcc
aagaagaccgatcttgtggtggcagggccgggggccggttccaagcttgccaaggccacg
gaactgggcattgaggtcatcaatgaagacgactggttcaagcttgttggggaggattga
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