Bacillus vallismortis: B9C48_03490
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Entry
B9C48_03490 CDS
T04948
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bvm
Bacillus vallismortis
Pathway
bvm03030
DNA replication
bvm03410
Base excision repair
bvm03420
Nucleotide excision repair
bvm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bvm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B9C48_03490 (ligA)
03410 Base excision repair
B9C48_03490 (ligA)
03420 Nucleotide excision repair
B9C48_03490 (ligA)
03430 Mismatch repair
B9C48_03490 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bvm03032
]
B9C48_03490 (ligA)
03400 DNA repair and recombination proteins [BR:
bvm03400
]
B9C48_03490 (ligA)
Enzymes [BR:
bvm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
B9C48_03490 (ligA)
DNA replication proteins [BR:
bvm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
B9C48_03490 (ligA)
DNA repair and recombination proteins [BR:
bvm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
B9C48_03490 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B9C48_03490 (ligA)
MMR (mismatch excision repair)
DNA ligase
B9C48_03490 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
B9C48_03490 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH_8
5_3_exonuc
HHH_3
Motif
Other DBs
NCBI-ProteinID:
ARM26936
LinkDB
All DBs
Position
666996..669002
Genome browser
AA seq
668 aa
AA seq
DB search
MDKETAKHRAEELRRTIDQYSYEYYTLDEPSVPDSEYDRLMQELIAIEEEHPELRTPDSP
TQRVGGAVLESFQKVQHGTPMLSLGNAFNDDDLRDFDRRVRQAVGDGVAYNVELKIDGLA
VSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKMKRNLSIEVRGEAYMPKQSFEA
LNEERLKHEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVETQSQGLD
FLDELGFKTNQERKKCATIDEVIEMIEELQAKRADLPYEIDGIVIKVDSLDQQEELGYTA
KSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAVLEPVKVAGTTVSRASLHNEDLI
KEKDIRILDKVVVKKAGDIIPEVVNVLIEQRTGEEKEFNMPTSCPECESELVRIEGEVAL
RCINPECPAQIREGLIHFVSRNAMNIDGLGERVITQLFREHLVRNVADLYKLTKEQVIRL
ERMGEKSTDNLISSIQKSKENSLERLLFGLGIRFIGSKAAKTLAMHFESLENLKQATEEE
LLAVDEIGEKMADAVVTYFRKEEMLELLNELEELGVNTLYKGPKKVKAADSDSYFAGKTI
VLTGKLEELSRNEAKAQIEALGGKLTGSVSKKTDLLIAGEAAGSKLTKAQELNIEVWNEA
QLLGELKK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggacaaagaaacagcgaaacaccgggcagaagaattgcgccgcaccatcgatcagtac
agttatgaatattacaccttagatgaaccgagcgtgccggattccgagtacgacagactg
atgcaggagctgattgccatagaggaagagcacccggagctcagaacgcctgattcgccc
acacagcgggtcgggggagcggtgcttgaatcgtttcaaaaggtgcagcacggcacgccg
atgctcagtctcggcaacgcatttaacgatgatgatctccgcgattttgaccgccgcgtc
cgtcaggctgtcggtgacggcgtcgcttataatgtggagctgaaaatagacggtcttgct
gtttctctccgttatgaagacggctattttgtcagaggcgcgacaagaggagacggaacg
acgggcgaagatatcacggaaaacttaaaaacgatccgcaacattccgctgaaaatgaaa
cggaatctttccatagaagtgcgcggagaggcgtacatgccgaaacagtcatttgaagcc
ctcaatgaagaaaggctgaaacatgaagaggagccgttcgccaatccccggaacgcggct
gcgggctcactcagacagcttgatccgaaaattgcagcgaaacgaaatcttgacatcttc
gtctacagtatagcggagcttgacgagatgggtgtggaaacacagagtcagggcctggat
tttctggatgagctcggttttaaaacaaaccaggaacggaaaaaatgcgccacgatagat
gaagtcattgaaatgatcgaagagctgcaggcgaagcgggccgatctcccgtatgaaatt
gacggaatcgtcatcaaagtcgattcgctcgaccagcaggaagagctcgggtatacggca
aagagcccgcgctgggcgattgcttataaatttccggcggaagaggtcgtgacaaaactt
ctcgatatcgaactgaatgtcggaagaacgggcgtgattacgccgaccgccgttctggaa
ccggtaaaagtcgcggggacgacggtctcaagagcctcccttcataacgaagatttaatt
aaagagaaggatatccgcattctcgataaagtggtcgtcaaaaaagcgggcgacatcatc
cctgaggtcgtcaatgtcttaatcgaacagcggaccggggaagaaaaagaattcaatatg
ccgaccagctgccctgagtgcgaaagcgaacttgtccgcattgaaggggaagtcgcgctg
cgctgcatcaatccggaatgtccggcgcagatcagagaaggcctgattcactttgtctca
cgcaacgcgatgaatattgacggactcggagaacgtgtcatcacacagcttttccgtgaa
catctcgtccgtaatgtcgctgatttgtataagctgacaaaagaacaggttatccggctt
gagcggatgggggaaaaatcaactgacaatctgatcagctccatccaaaagtcaaaagag
aattcgctggaacgcctgctgttcggtctcggcatccgttttatcggctcaaaagcggcc
aaaacactcgccatgcattttgaaagcctggaaaatctgaaacaagccacggaagaagag
ctgcttgcggtagatgaaatcggcgaaaagatggccgatgccgttgtcacctatttccgc
aaagaagaaatgcttgagcttttgaatgaacttgaggaactcggtgtgaacacactctac
aaaggcccgaaaaaagtaaaagcggcggacagcgactcttattttgccggcaaaaccatc
gtgttaaccggaaagcttgaagagctgtccagaaatgaagccaaggcgcagattgaagcg
ctcggcggaaagctgacgggatctgtcagcaaaaaaacagacttgctgattgccggagaa
gcggccggaagcaagctgacaaaagcgcaggaattaaacattgaagtatggaatgaagca
cagctattgggagagctaaagaaataa
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integrated database retrieval system
