Bremerella volcania: Pan97_43900
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Entry
Pan97_43900 CDS
T06456
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bvo
Bremerella volcania
Pathway
bvo03030
DNA replication
bvo03410
Base excision repair
bvo03420
Nucleotide excision repair
bvo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bvo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Pan97_43900 (ligA)
03410 Base excision repair
Pan97_43900 (ligA)
03420 Nucleotide excision repair
Pan97_43900 (ligA)
03430 Mismatch repair
Pan97_43900 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bvo03032
]
Pan97_43900 (ligA)
03400 DNA repair and recombination proteins [BR:
bvo03400
]
Pan97_43900 (ligA)
Enzymes [BR:
bvo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Pan97_43900 (ligA)
DNA replication proteins [BR:
bvo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Pan97_43900 (ligA)
DNA repair and recombination proteins [BR:
bvo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Pan97_43900 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Pan97_43900 (ligA)
MMR (mismatch excision repair)
DNA ligase
Pan97_43900 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Pan97_43900 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
RNA_pol_A_CTD
RNA_ligase
POLH-Rev1_HhH
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QDU77323
UniProt:
A0A518CDM0
LinkDB
All DBs
Position
complement(5339463..5341487)
Genome browser
AA seq
674 aa
AA seq
DB search
MSVETDVQELRDQIRYHDRKYYVEATPEISDLEYDKLLSRLKELESQHPELITPDSPTQR
IGDAPVPYLEQHEHRIPMLSIDNTYSLDELKKYGERINKLLPDEKIAWVVELKIDGVAVS
ILYEDGVLTRALTRGNGTVGDDITHNVRTIADVPLKLSGENVPPVLEVRGEIYMTNADLV
KLNEKQAEAGQPAYKNTRNVTAGTIRLLDPRIAAERNLRVFCHGVGYAEGLKATSHTEFL
EELNSYGLPATPFVQSFVDFDSAIEHCQELIESLHELEFEVDGLVLKVDRFDQRERLGST
SKSPRWLIAYKFEKYEATTKVNNIEVQVGKTGAITPVAILEPVELAETTVSRASLHNAEE
IERKDVRIGDVVVVEKAGKIIPHIVRTEKHERKEDLPLFPFPTKCPSCDTPVVKDEGGVY
IRCPNWQGCAAQIKERIRYFATRNAMDIEGLGDKLVDMLVDEKLVKTYGDLYRLTSEQIA
ALPRMGKKSGDKLVAAAIDSKSRGLGRLLNALSIRHVGARGAERLALHFGTIDKLMEASE
EEIAEIEDVGGVIAKSVHEFFHSEFGKETIEDLKGVGVSMEAAKRGEEAGPAVFDGMTFV
VTGTLEKFTRDEIEELIRARGGKASGSVSKKTSYVVAGEKAGSKLEKAQALGVSVLNEQQ
FADLLAEKDAAAAE
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtcgaaacggatgttcaagagctgcgggaccagatccgctaccatgatcggaag
tactatgtcgaagccactccggagatttcagaccttgagtacgacaagcttctcagccgg
ctaaaagaactcgaatcgcagcatcctgagctgatcacgccggatagtccaacccagcgg
atcggcgatgccccggttccctatttggaacagcacgagcatcgcatcccgatgctttcg
atcgacaacacctacagcctggacgaactaaagaagtacggggagcgaatcaacaagctt
ttgcccgatgaaaagattgcctgggttgtcgagttgaaaattgacggcgtagccgtatcg
atcctctacgaggatggcgtacttacgcgtgcacttacgcgcggcaacggaacggtcggg
gacgatattactcataacgttcgtacaatcgccgacgtgccactcaagctgtctggcgaa
aacgttccgccggtactggaggtacgcggcgaaatctacatgaccaacgctgatctggtg
aagcttaacgagaagcaagccgaagcagggcaaccggcctacaagaacacgcgtaacgtg
acggcgggcacgattcgtttgcttgatccacgtatcgccgccgagcgtaatctccgggta
ttctgccacggggtcggatacgccgaaggactcaaggcgacttctcataccgaatttttg
gaagagttgaactcgtatggtttgccagcgacgccatttgtgcaatcgtttgtcgatttt
gattccgcgatcgagcactgccaggagttgatcgagtcactacatgagttggagttcgag
gttgatgggctcgttctgaaagtcgatcgtttcgaccagcgagaacgtctcgggtcaacc
tcaaagagtcctcgctggttgattgcttacaaattcgagaagtatgaagcgacgaccaag
gtcaacaatatcgaggtccaggtcggcaaaacgggagccatcacaccggttgcgattctg
gagccggttgaactggccgagacgacggtttcccgagcgagtttgcacaacgcggaagag
atcgaacgtaaggatgtgcggattggcgacgttgtggtcgtcgagaaggcaggtaagatc
attccgcatatcgttcgtaccgagaaacacgaacgaaaagaagacctgcccctcttccct
ttcccgaccaagtgcccttcatgcgacacgcctgtggtcaaggatgaaggaggggtgtac
attcgatgccccaattggcaagggtgtgcggctcagatcaaagaacgcattcgctatttt
gccacgcggaatgcgatggatatcgagggcttgggggacaaactggtcgacatgttggtc
gacgagaagttggtgaagacctacggcgatctgtatcgtctgacttcggagcaaatcgct
gccttgccacgcatggggaagaagtcaggcgacaaactagttgctgcggcaatcgatagt
aagtcacggggacttggccgtctattgaacgccctttccattcgccatgtcggagcccga
ggagccgaacgtttggcccttcacttcgggacgatcgacaaattgatggaagcctcggaa
gaagagatagcggaaatcgaagacgtcggcggagtgattgccaagagcgtccacgagttt
ttccatagcgaattcggaaaggaaaccatcgaagatctcaaaggggtcggtgtctcgatg
gaagcggccaagcgaggcgaagaagctggaccggcggtcttcgatggaatgacgtttgtg
gtgacaggcacgctagaaaaattcactcgggacgaaatcgaggaactgattcgtgcccga
ggggggaaagcatcaggaagtgtttccaagaaaacgagttacgtcgttgccggggaaaag
gcgggaagtaagctcgaaaaagcccaggcactgggcgtgagcgtactgaacgagcagcag
ttcgccgatctcctggccgaaaaagacgcagccgctgccgagtga
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integrated database retrieval system
