Rossellomorea vietnamensis: FHE72_02140
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Entry
FHE72_02140 CDS
T07200
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bvq
Rossellomorea vietnamensis
Pathway
bvq03030
DNA replication
bvq03410
Base excision repair
bvq03420
Nucleotide excision repair
bvq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bvq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FHE72_02140 (ligA)
03410 Base excision repair
FHE72_02140 (ligA)
03420 Nucleotide excision repair
FHE72_02140 (ligA)
03430 Mismatch repair
FHE72_02140 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bvq03032
]
FHE72_02140 (ligA)
03400 DNA repair and recombination proteins [BR:
bvq03400
]
FHE72_02140 (ligA)
Enzymes [BR:
bvq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FHE72_02140 (ligA)
DNA replication proteins [BR:
bvq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FHE72_02140 (ligA)
DNA repair and recombination proteins [BR:
bvq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FHE72_02140 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FHE72_02140 (ligA)
MMR (mismatch excision repair)
DNA ligase
FHE72_02140 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FHE72_02140 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
RNA_pol_A_CTD
HHH_3
5_3_exonuc
HHH
DnaG_cat_HB
Motif
Other DBs
NCBI-ProteinID:
QHE59958
UniProt:
A0A6I6UDC4
LinkDB
All DBs
Position
410780..412786
Genome browser
AA seq
668 aa
AA seq
DB search
MDRQSAEKRINELHERLNQYNYEYHVLDKPSVPDSEYDQLLRELIELEDQFPELKSADSP
SQRVGGTILDSFEKVEHRTPMLSLGNAFNEEDLRDFDRRVRQAVGEDFSYVCELKIDGLA
VSLRYEDGAFVQGATRGDGSIGEDITSNLKTIRSIPLKISEKMTFEVRGEAFMPKGSFEA
LNKIKEEKGEEPFANPRNAAAGSLRQLDPKIAASRNLDIFLYALADIGDTGIDSHSEGLD
TLDKLGFKTNPERKRCATIEEVLEFVGKWTDERPNLSYDIDGIVIKVDSLDQQQELGTTA
KSPRWAIAFKFPAEEVVTVLKDIELSVGRTGVVTPTAILEPVRVAGTTVQRASLHNEDLI
REKDIKIGDHVVIKKAGDIIPEVVNVLEDKRTGDEQEFLMPTHCPECESELVRLEGEVAL
RCINPKCPAQIREGLIHFVSRNAMNIDGLGEKVISQLFREKLIEDVADLYRLERDQLLQL
ERMGEKSVDNLLEAIQTSKENSLEKLLFGLGIRHVGAKAAKTLAQEFGSMDRLMELGKEE
LTNVNEIGDKMADAIVAYFENDEVKDLIQELKEAGVNLEYKGPKPVSASDVDSYFAGKTI
VLTGKIERLSRNEAKEKIEMLGGKVTGSVSKKTDLVIAGEEAGSKLTKANDLNIEVWDED
KLMEELNR
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggatcgacaatcagccgaaaagcgtatcaatgaactccacgaacgattgaaccaatat
aattacgaatatcatgtcctcgacaaaccttctgtcccggattcagagtatgatcaactc
ctcagggaactcattgaactcgaggaccagtttccggaattgaaatcagcggattcacct
tcccagcgtgtgggtggaaccattcttgattcgttcgaaaaagtcgagcacagaacgccg
atgctgagccttgggaatgcctttaatgaagaagatcttcgtgactttgaccgccgtgtc
cgtcaagcggtcggggaggacttctcctacgtttgcgagttgaagatcgatggtttggct
gtttctctcagatatgaagacggggcgttcgtccaaggggctacacggggtgacgggtcc
ataggtgaggacatcacatcgaatctgaagaccatccgttccatcccgttaaagatttca
gaaaaaatgaccttcgaagttcggggagaggcatttatgccgaaaggatcctttgaagca
ctgaataagatcaaagaagaaaaaggggaagaaccctttgccaatccgcgtaacgcagcg
gcaggttcactccgccagctggatccgaaaatcgcggcctcccggaatctcgacattttc
ctgtatgccctggctgatatcggggatacaggaatcgactcccatagcgagggattggat
acgcttgataaactcggctttaaaacaaacccggaacgcaagcgttgtgcgaccattgaa
gaagtccttgaatttgtcgggaagtggacagatgaacgtccgaatctatcctatgacatt
gacgggatcgtcataaaggtcgactcccttgatcagcagcaggaacttggaacgacagcg
aaaagcccgaggtgggccattgcgttcaagtttcctgccgaagaagtcgtcacggtactg
aaggacattgaattgagtgtaggtcgtacaggagtcgtcacgccaacggccattctggaa
ccagtccgtgtagcgggaacgaccgtacaacgtgcttcgcttcacaatgaggatcttatc
cgtgaaaaagatatcaaaatcggtgaccacgtcgtcattaaaaaagcgggggacatcatc
ccggaagtggtgaacgtactggaagacaagaggaccggtgacgaacaggaattcctgatg
ccgactcattgtcctgagtgtgaaagtgaacttgtgagacttgaaggggaagtggccctc
cgctgcattaatccgaaatgtcccgctcaaatcagggaagggctcattcactttgtatcc
cgcaacgccatgaacatcgacggcctgggtgaaaaggtgatcagtcagctgttcagggaa
aaattgattgaagacgtagccgatttatacagactcgagcgcgatcagcttcttcagctg
gaacggatgggcgagaaatccgttgataatttgttggaagccattcaaacgtctaaagag
aattctctggagaaactgttattcggtcttggcatccgtcacgtaggagccaaagccgca
aagacgttggcacaggaattcggctcaatggataggctgatggaattggggaaagaagag
ctgacgaacgtaaatgagatcggggataaaatggccgatgccatcgtcgcttacttcgaa
aatgatgaagtgaaggatctcattcaggagctgaaagaggcaggtgtgaaccttgaatac
aaaggaccgaagcctgtatcggccagtgacgtcgactcgtattttgcaggcaagaccata
gtcctcacagggaaaatcgaacgattgagccgaaatgaagcaaaagaaaaaatcgagatg
ctcggcgggaaagtgaccggcagtgtcagcaagaaaaccgatcttgtcattgcaggggaa
gaagcgggatcgaagcttacgaaagcgaatgacttaaatatagaagtctgggatgaggat
aagctgatggaagaacttaaccgataa
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integrated database retrieval system
