Phocaeicola vulgatus: BVU_3306
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Entry
BVU_3306 CDS
T00546
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bvu
Phocaeicola vulgatus
Pathway
bvu03030
DNA replication
bvu03410
Base excision repair
bvu03420
Nucleotide excision repair
bvu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bvu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BVU_3306
03410 Base excision repair
BVU_3306
03420 Nucleotide excision repair
BVU_3306
03430 Mismatch repair
BVU_3306
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bvu03032
]
BVU_3306
03400 DNA repair and recombination proteins [BR:
bvu03400
]
BVU_3306
Enzymes [BR:
bvu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BVU_3306
DNA replication proteins [BR:
bvu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BVU_3306
DNA repair and recombination proteins [BR:
bvu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BVU_3306
NER (nucleotide excision repair)
GGR (global genome repair) factors
BVU_3306
MMR (mismatch excision repair)
DNA ligase
BVU_3306
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BVU_3306
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
DNA_pol_lambd_f
PADR1_Zn_ribbon
RNA_pol_A_CTD
EAD10
KorB
zinc-ribbons_6
Motif
Other DBs
NCBI-ProteinID:
ABR40932
UniProt:
A6L5G8
LinkDB
All DBs
Position
complement(4141977..4143974)
Genome browser
AA seq
665 aa
AA seq
DB search
MTEIERIDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPEHRDENSPSMR
VGSDINKNFTQVVHKYPMLSLANTYSETEVTEFYDRVKKSLNEDFEICCEMKYDGTSISL
TYENGKLVRAVTRGDGVQGDDVTGNVKTIRSIPLVLHGKGYPETFEIRGEILMPWVVFEE
LNKEREAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGDNLPCDGHYENLKE
AEKWGFKISDLTRKCKTLQEVFDFIKYWDVERKNLPVATDGIVLKVNSLRQQRNLGFTAK
SPRWAIAYKFQAEQALTRLNKVTYQVGRTGAVTPVANLDPIQLSGTVVKRASLHNADIIE
GLDLHIGDMVYVEKGGEIIPKIVGVDKDARIMIGDKVKFITHCPECGSKLVRYEGEAAYY
CTNDAACPPQIKGKIEHFISRRAMNIDGLGPETVDQFYQEGLIRDVADLYTLKTSDIINL
ERMGEKSAENIIKGIEQSKEVPFERVLFALGIRFVGETVAKKVAKSFKSMDALADASLDN
LIHVDEIGEKIAQSILLYFANPKNRDIIERLRVAGVRLEADEEDTSEHTDKLAGKSIVIS
GVFAHHSRDEYKELIEKHGGKNVGSISSKTSFILAGDNMGPSKLEKAQKLGVTIVSEEEF
LQMIE
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgacagaaatagaaagaatagaccaattgcgcgaggagcttcatcgacataactataat
tattatgtattgaatgcgcctgagattacagaccaggagtttgacaagctgatgcgtgaa
cttcaggatctggaagaaaaacatccggaacatagagatgagaactcgcccagtatgcgt
gtgggaagtgatataaacaaaaatttcacgcaggtggtacataaatatcctatgctttca
ttggctaacacctattcggaaacggaagtaaccgagttttatgacagggtaaagaagtct
ctgaacgaggattttgaaatttgttgtgaaatgaagtatgatggaacttccatctctctg
acttatgagaacggaaaactggtgcgcgccgtgacgcgtggcgatggtgtgcagggagat
gatgtgacaggcaatgtaaagaccatccgcagtatccctttggtgctgcatggaaagggg
tatcctgaaacatttgaaattcgtggggagattttgatgccttgggtggtgtttgaggaa
ttgaacaaagaacgggaagcccgcgaagaaccgttgttcgccaatccccgcaacgcggct
tcgggaacattgaagttgcagaattctgctattgtggcatctcgcaagctggatgcctac
ctttattatttacttggagataatttgccgtgcgacggtcattatgaaaatctgaaagaa
gctgagaaatggggatttaaaatttccgatctcactcgcaaatgcaaaacattgcaggaa
gtttttgattttatcaaatactgggatgtggagcgtaagaatctgcctgtagctacggat
ggaatagtattgaaagtgaattctttgcgacagcagcgtaatttgggttttacggcaaaa
tcaccccgatgggccattgcatacaagtttcaagccgaacaggcacttacccgcttgaac
aaggtgacctatcaagtggggagaacaggtgctgtgactccggtggccaatctggatcct
atacagttgtccggaaccgtggtaaagcgtgcttcgctccataatgccgacatcatagaa
gggttggatttgcatattggtgatatggtatatgtagaaaaaggcggtgagattattcca
aagattgtaggtgtggacaaagacgcccgtattatgataggtgacaaagtaaagtttatt
actcattgtcccgagtgtggcagtaaattggtacgctatgaaggtgaagctgcttattat
tgtaccaatgatgccgcttgccccccacagatcaagggaaaaatagaacattttatcagc
cgtagagctatgaatattgatggtctcggtccggaaacggtagatcagttttaccaggaa
ggattgatacgtgatgttgccgatctgtatactttaaaaacatcggatatcatcaaccta
gaacgtatgggagaaaaatctgccgagaatataataaaaggtatagagcagtccaaagaa
gtgccgttcgaaagggtactctttgcattgggcatccgttttgtgggtgaaactgtggcg
aagaaggtggcaaaatcctttaagtcgatggatgctttggcagacgcgagtttggataat
ttgattcatgtcgatgaaatcggagaaaaaatagcgcagagtatcttgttgtattttgct
aatccgaagaatcgtgacattatagagcgtcttcgtgtggcgggtgtgagactggaagcc
gatgaggaggatacttcggaacacactgacaaactggcagggaaatctatcgtgatcagt
ggggttttcgcccatcattcgcgtgacgaatataaggagttaattgaaaagcatggcggt
aagaatgtgggaagtatttcgtccaagaccagctttattctggcaggtgacaatatgggg
cccagtaaactggagaaagcgcagaaactgggtgtgaccattgtgagcgaagaggagttt
ctgcaaatgatagagtga
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