Candidatus Blochmannia vicinus (nom. nud.): M9408_00890
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Entry
M9408_00890 CDS
T08509
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bvx
Candidatus Blochmannia vicinus (nom. nud.)
Pathway
bvx03030
DNA replication
bvx03410
Base excision repair
bvx03420
Nucleotide excision repair
bvx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bvx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M9408_00890 (ligA)
03410 Base excision repair
M9408_00890 (ligA)
03420 Nucleotide excision repair
M9408_00890 (ligA)
03430 Mismatch repair
M9408_00890 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bvx03032
]
M9408_00890 (ligA)
03400 DNA repair and recombination proteins [BR:
bvx03400
]
M9408_00890 (ligA)
Enzymes [BR:
bvx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
M9408_00890 (ligA)
DNA replication proteins [BR:
bvx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
M9408_00890 (ligA)
DNA repair and recombination proteins [BR:
bvx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
M9408_00890 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
M9408_00890 (ligA)
MMR (mismatch excision repair)
DNA ligase
M9408_00890 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
M9408_00890 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
Nlig-Ia
DNA_ligase_ZBD
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
URJ33156
LinkDB
All DBs
Position
complement(209911..211698)
Genome browser
AA seq
595 aa
AA seq
DB search
MKFIEKKIQNLRKKLHHWEYLYYIKNASEVSDEKYDAILAELHQLEKIYPHLITENSPTQ
CIGGVLQDNFKKINHKIPMLSLNSIIKSHQLLSFDRRVKIKLDDHHIIPYCCELKIDGVA
VSLLYKNGKLVCAATRGDGKIGEDVTENVRTIYSVPMYLKIDVNNHDKIPYLLEIRGEIF
ISKLCFLQLNEITVREGNRPFSNSRNAASGSLRQLDPAITAKRPLSFYCYGVSDYFGKKE
LPDSHWERLQLCKNWGLPISNHISLVNGIDKVLAYYSYIERIRASLEFNIDGIVVKINSC
KYQNKLGCGSKAPNWAVSYKFPAEIRSTKVDNVIFQVGRTGIITPIAYLEPIMISDVIIR
KVSIHNINEVKRLGLMVGDTVRIQRSGDVIPKILEVVLSKRTDRVKAIKFPHFCPICGSL
IATQYRQSILRCTAGLSCLAQRKAALEHFSSRKAMNIYGMGNRIIDQLVNKNLVSTPVDF
FNLNENKLLCLEGFGAEHAKRLLWAIENSKKITLARFIYALGIRGVGETVANNLAVVYKT
IENLVTADLRSLSDLKYIGPIVANNIYHFFRNPDNLKNIQDLIDPSIGIQLSVII
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttattgaaaaaaaaatacaaaacttaagaaaaaaattacatcattgggaatat
ttatattacataaaaaatgcatctgaagtatctgatgaaaaatatgacgcaatattagca
gaactacatcagttagaaaaaatttatccccatttaattacagaaaattctcctactcaa
tgtataggaggtgtgttgcaagataattttaaaaaaataaatcataaaataccgatgtta
tctttaaatagtattattaaatcacatcaattgttatcatttgatagacgagtaaaaatt
aaacttgatgatcatcatattatcccatattgttgtgagttaaaaatagacggagtggca
gttagtttgttatataaaaacggaaaattagtttgtgcagcaactcgaggtgatggaaaa
attggagaagatgttactgaaaatgtgcgtaccatttattcagtacctatgtatttaaaa
attgatgtcaataatcatgataaaataccatatttgttagaaattagaggagaaatattt
atatctaaattatgctttttacaattaaatgagataacagtgcgggaaggtaatagacct
ttttctaattctagaaatgctgcttctggttcattacgtcaattagatcctgctattact
gctaaacgtccattaagtttttattgttatggtgttagtgattattttggaaaaaaagaa
ttaccagatagtcattgggaacgattacagttatgtaaaaattggggtttaccaattagt
aatcatattagcttagttaacggaattgataaagtattagcatattattcctatatagaa
agaatacgagctagtttagagtttaacattgatgggatagtggttaaaataaatagttgt
aaatatcaaaataagttaggttgcgggtctaaagctcctaattgggctgtttcttataaa
tttcctgcagagataagatctactaaagtagataatgtaattttccaggttggacgaaca
ggtattattactccaatagcttatttggagcctattatgatttctgatgttataattagg
aaagttagtattcataatattaatgaagttaagagacttggattgatggttggtgatacg
gttcgtatacaaagatctggtgatgttattcctaaaattttagaagtagttttatcgaaa
cgtactgatcgtgtgaaagctataaaatttccacatttttgtccgatatgtggatctctt
attgcaacgcagtatcgtcagtcaatattacgttgtacagctggattatcgtgccttgct
cagagaaaggcagcgcttgaacatttttcttctagaaaagcaatgaatatttatggcatg
gggaatagaattattgaccaattagttaataaaaatttagtatctactccagttgatttt
tttaatttaaatgaaaataagttgctttgtttggaagggtttggcgcggagcatgctaaa
cgtttattatgggctattgaaaattctaaaaaaattactttggctcggtttatatatgca
ttaggtattcggggtgtaggtgaaacggtagcaaataacttagctgttgtatataaaact
attgaaaatttagttactgctgatttacggtcattgtcagatttgaaatatattggccca
attgtagctaataatatatatcatttttttagaaatcctgataatttaaaaaatatccag
gacttaattgatccttctattgggattcaattaagtgttattatttaa
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