Brevundimonas vancanneytii: NCTC9239_01998
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Entry
NCTC9239_01998 CDS
T06708
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bvy
Brevundimonas vancanneytii
Pathway
bvy03030
DNA replication
bvy03410
Base excision repair
bvy03420
Nucleotide excision repair
bvy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bvy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC9239_01998 (ligA)
03410 Base excision repair
NCTC9239_01998 (ligA)
03420 Nucleotide excision repair
NCTC9239_01998 (ligA)
03430 Mismatch repair
NCTC9239_01998 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bvy03032
]
NCTC9239_01998 (ligA)
03400 DNA repair and recombination proteins [BR:
bvy03400
]
NCTC9239_01998 (ligA)
Enzymes [BR:
bvy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC9239_01998 (ligA)
DNA replication proteins [BR:
bvy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC9239_01998 (ligA)
DNA repair and recombination proteins [BR:
bvy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC9239_01998 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC9239_01998 (ligA)
MMR (mismatch excision repair)
DNA ligase
NCTC9239_01998 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC9239_01998 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
Zn_ribbon_NUD
DZR_2
Motif
Other DBs
NCBI-ProteinID:
VTO16196
UniProt:
A0A4P1K9U7
LinkDB
All DBs
Position
1:1960374..1962698
Genome browser
AA seq
774 aa
AA seq
DB search
MSDLFTPVETLTEAQAREELDRLSAELARHDALYYADAAPEISDADYDELKRRALALEAA
FPTLSGPISPSQRVGAPASTQFAEVRHGVPMLSLDNAFDDGEVRDFVARIARFLKLPGDE
PIAFVAEPKIDGLSASLRYEKGVLVQGATRGDGKTGEDVTANLRTLDSIPETLAGSGWPD
VIEIRGEVYAPNAAFDAFNAAAEAEGKRTYANPRNFAAGSLRQKDPKITAQRPLTFFAYA
WGETSAPFAETQAGALEAFRNWGFQVNDRSARVEGAEGLIGVYQTLEADRSRLGYDIDGV
VYKVDRLDWQQRLGFIARSPRWAIAHKFPAQQATTVLEGIDIQVGRTGSLTPVARLHPVT
VGGVVVRNATLHNEDEIARKDVRIGDTVVLQRAGDVIPQIVGVVETLRPDGAAPYVFPTV
CPVCGSEAVREGDEVKRRCTGGLICDAQIVERLKHFVSRRAFDIEGLGEKQLIAFHARGW
IKEPADIFRLARDEEKLALLRAEDGYGETSVGNLIAGIDARRVISLDRLIFGLGVREIGE
QTSLVLSRAFGSWTAFRDACMAAASGLASDDWKTLAATHAISTRVLGLMAEAQPPADDPW
PEAPMDQKIALAFPGMAAPARRSLAEISEGWSDLTRWAAVARDEGPSDMLNQIAGVSGVG
PVAAEALAHFFHEPHNLQVVDALLAELERVEDVAAPVTDSPVAGKTVVFTGSLERFTRDE
AKARAESLGAKVSGSVSKKTDYVVAGPGAGSKLKDAEKHGVTVLTEDEWLALIS
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacctcttcacgcccgtcgaaaccctgaccgaagcccaggcgcgcgaagagctg
gatcgcctgtcggccgaactggcgcgtcacgacgccctctattacgccgacgccgcgccc
gagatttccgacgccgactatgacgagctgaaacgccgcgccctggccctggaagccgcc
ttcccgaccctgtccggcccaatctcgccgtcccagcgcgtcggcgccccggcctcgacc
cagttcgccgaggtccgccacggcgtgcccatgctgtcgctggacaacgccttcgacgac
ggcgaggtgcgcgacttcgtcgcccgcatcgcccgcttcctcaagctgccgggcgacgaa
ccgatcgccttcgtcgccgagcccaagatcgacggcctctcggccagcctgcgctacgaa
aagggcgtcctggtccagggcgccacgcgcggcgacggcaagacgggcgaggacgtgacc
gccaatctgcgcacgctggacagcatccccgagacgttggcgggctccggctggcccgac
gtcatcgagatccggggcgaggtctacgcccccaacgccgccttcgacgccttcaacgca
gcggccgaagccgaaggcaagcgcacctacgccaacccgcgcaacttcgccgccgggtcg
ctgcgccagaaagacccgaagatcacggcccagcgccccctgaccttcttcgcctacgcc
tggggcgagacctccgcccccttcgccgagacgcaggcaggcgcgctggaggccttccgc
aactggggctttcaggtcaacgaccgttcggcccgcgtagagggcgccgagggcctgatc
ggcgtctaccagacgctggaggccgaccgcagccgcctcggctacgacatcgacggcgtg
gtctataaggtcgaccgtctggactggcagcagcgcctcggcttcatcgcccgcagccct
agatgggccatcgcccacaagttcccggcgcaacaagccacgaccgtgctggaaggcatc
gacattcaggtcggccgcaccggctccctgacccctgtcgcgcgcctgcatcccgtcacc
gtcggcggcgtcgtggtccgcaacgccaccctgcacaacgaggacgagatcgcccgcaag
gacgtccgcatcggcgacactgtcgtcctgcaacgcgccggcgacgtcatcccccagatc
gtcggcgtggtcgaaaccctgcgccccgacggcgccgccccttacgtcttccccaccgtc
tgccccgtctgcggctccgaagccgtgcgcgagggggacgaggtcaagcgccgctgcacc
ggcggcctgatctgcgacgctcagatcgtcgagcgcctcaagcatttcgtcagccgccgc
gccttcgacatcgagggcctcggcgaaaagcagctgatcgccttccacgcccgcggctgg
atcaaggagcccgccgatatcttccgcctggcccgcgacgaggagaagctggccctgctg
cgcgccgaggacggctatggcgagaccagcgtcggcaacctgatcgccggcatcgacgcg
cgccgcgtcatcagcctcgaccgcctgatcttcggcctgggcgtgcgcgagatcggcgaa
cagacctcgctggtgctgtcgcgcgccttcggcagctggaccgccttccgcgacgcctgc
atggccgccgccagcggcctcgccagcgacgactggaagaccctggccgcgacccacgcc
atctcgacccgcgtcttgggcctgatggccgaggcgcagcctcccgccgacgatccgtgg
ccggaagcgccgatggatcagaagatcgccctcgccttccccggcatggccgcgcccgcc
cgccgctcgctggcggaaatctccgaaggctggtccgacctgacccgctgggccgccgtc
gcgcgcgatgaaggcccgtccgacatgctgaaccaaatcgcgggcgtctccggcgtcggc
ccggtcgccgccgaggccctggcccacttcttccacgagccgcacaaccttcaggtcgtc
gacgccctgctggccgaactcgagcgcgtcgaggacgtggccgcccccgtgaccgacagc
ccggtggcgggcaaaaccgtcgtcttcaccggctcgctggaacgcttcacccgcgacgaa
gccaaggcccgcgccgaaagcctcggcgccaaggtctcgggctcggtgtcgaagaagacc
gactacgtcgtcgccggtcccggcgccggctccaagctgaaagacgccgaaaagcacggc
gtgaccgtcctgaccgaggacgagtggctggcgcttatttcctga
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