Bradyrhizobium vignae: BRAD3257_2665
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Entry
BRAD3257_2665 CDS
T06968
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bvz
Bradyrhizobium vignae
Pathway
bvz03030
DNA replication
bvz03410
Base excision repair
bvz03420
Nucleotide excision repair
bvz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bvz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BRAD3257_2665 (ligA)
03410 Base excision repair
BRAD3257_2665 (ligA)
03420 Nucleotide excision repair
BRAD3257_2665 (ligA)
03430 Mismatch repair
BRAD3257_2665 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bvz03032
]
BRAD3257_2665 (ligA)
03400 DNA repair and recombination proteins [BR:
bvz03400
]
BRAD3257_2665 (ligA)
Enzymes [BR:
bvz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BRAD3257_2665 (ligA)
DNA replication proteins [BR:
bvz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BRAD3257_2665 (ligA)
DNA repair and recombination proteins [BR:
bvz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BRAD3257_2665 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BRAD3257_2665 (ligA)
MMR (mismatch excision repair)
DNA ligase
BRAD3257_2665 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BRAD3257_2665 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
SPP93733
UniProt:
A0A2U3PX58
LinkDB
All DBs
Position
BRAD3257:2443696..2445843
Genome browser
AA seq
715 aa
AA seq
DB search
MARAAKSKPLRDLADLTKAQAKVEHMRLSLEIEGHNERYYQEDAPSVTDAEYDALRQRLN
AIEKRFPEFVTADSPSQKVGAAPSGRFKKVRHSLPMLSLDNAFAEEDVRDFVGRIVRFLK
LDDDKVDFSAEPKIDGLSMSLRYEGGELVTAATRGDGAVGEDVTANIRTLEDVPQKLKSR
NVPDICEVRGEVYMTKKAFLALNERQKAEGGTIFANPRNSAAGSLRQKDATITASRPLGF
FAYAWGQMSAMPEDTQSGMIGWFERCGFKTNPLTKLCHSVEELLAFHHAIEEQRARLDYD
IDGVVYKVDRIDWQERLGFVSRTPRWGIAHKFPAERAMTVLRDIEIQVGRTGSFTPVGKL
EPVGVGGVIVQNVTLHNEDYIKGIGNKGEVLREGRDIRIGDTVVIQRAGDVIPQVVDVVL
DKRPKTAKEFHFPKKCPCPLHTDVVREETATGEEGSRARCTGEFACPYQKIEHLKLFVSR
RAFDIDGLGEKQLQYFFDEGWVKEPADIFTLEQRNAKLKLEEVEGYGATSVRNLFGAIEN
RRKIALERFIYALGMRHVGETTALALARGYGSWDAFHDACLKVARGDEEAIADMDALDQI
GDTVIKSIADYFGESHNRGIVERLTSEVEIVDAEKPKSNSAVAGKTVVFTGSLEKMTRDE
AKATAERLGAKVSGSVSKKTDLVVAGPGAGSKLAEANKHGVKVLTEDEWLKLIGE
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atggccagagcagcaaaatcgaaaccgcttcgcgacctcgccgacctcaccaaggcgcag
gccaaggtcgagcatatgcggctgtcgctcgagatcgaggggcacaacgagcgatactat
caggaggacgcgcccagcgtcaccgacgccgaatatgacgcgctgcgtcagcgcctcaat
gccatcgagaagcgcttccccgaattcgtcaccgcggattcgccctcgcagaaggtcggc
gccgcgccgtcaggccgcttcaagaaagtccggcattccctgcccatgctgtcgctcgac
aatgcctttgcggaagaggacgtgcgtgatttcgttgggcgcatcgtccggttcctgaag
ctcgacgacgacaaggtcgatttctccgccgagccgaagatcgatggtctctcgatgtcg
ctgcgctacgagggcggcgagctcgtcaccgccgcgacgcgcggcgacggcgcggtcggc
gaggacgtcaccgccaacatccgcacgctcgaagacgttccgcagaagctgaagagccgc
aacgtccccgatatctgcgaggtacgcggcgaggtctacatgaccaagaaggcgttcctc
gcgctcaacgagcggcagaaggcggaaggcggcaccatcttcgccaatccgcgcaattcg
gccgccggctcgctccggcagaaggacgcgaccatcaccgcctcccgtcccctcggcttc
ttcgcctatgcctgggggcagatgagtgcgatgccggaggatacgcagagcggcatgatc
ggctggttcgagcgctgcggcttcaagaccaatccactgaccaagctctgtcactccgtc
gaggagctgctcgcgtttcatcatgcgatcgaggagcagcgcgcacggctcgactacgac
atcgacggcgtcgtctacaaggtcgaccgcatcgactggcaggagcggctcggcttcgtc
tcgcgcacgccgcgctggggcatcgcgcacaaattcccggcggagcgtgccatgacggtg
ctgcgcgacatcgagatccaggtcggccgcaccggctcgttcacgccggtcggcaagctc
gagccggtcggcgtcggcggcgtgatcgtgcagaacgtcacgctgcacaacgaggactac
atcaagggcatcggcaacaagggcgaggtgctgcgcgaggggcgcgacatcaggatcggc
gacaccgtcgtgatccagcgcgccggcgacgtcatcccgcaggtggtcgacgtcgtcctc
gacaagcggccgaagaccgcaaaggagttccacttcccgaagaagtgcccgtgtccgctg
cacaccgacgtcgtgcgcgaggagaccgcgacgggcgaggagggctcgcgcgcccgctgc
accggcgagttcgcctgtccctaccagaagatcgagcacctcaagctgttcgtgtcgcgg
cgggccttcgacatcgacggccttggcgagaagcagctccagtatttcttcgacgaggga
tgggtgaaggagcccgccgacatcttcacgctggagcagcgcaacgcgaagctcaagctc
gaggaggtcgagggctacggcgcgacctcggtgcgcaacctgttcggcgccatcgagaac
cggcgaaaaatcgcgctggagcgcttcatctatgcgctcggcatgcgccatgtcggcgag
accacggcgctggcgctggcgcgcggctacggctcgtgggacgccttccacgacgcttgc
ctcaaggtcgctcgcggcgacgaggaggcgattgcggacatggacgcgctcgatcagatc
ggtgacaccgtgatcaagagcatcgccgattatttcggcgagagccacaaccgcggcatc
gtcgaacggctgaccagtgaggtcgagatcgtcgacgccgagaagccgaagagcaactcg
gccgtcgccggcaagaccgtggtgttcacaggctcgctggagaagatgacgcgggatgaa
gccaaagcgacagctgagcggttaggggccaaggtgtcgggctcggtttcgaagaagacc
gatctggtggtcgccggccccggcgcgggctcgaagctcgccgaagccaacaagcacggc
gtcaaggtgctgaccgaggacgagtggctgaagctgatcggggagtga
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