Candidatus Bandiella euplotis: Bandiella_00922
Help
Entry
Bandiella_00922 CDS
T09675
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bwf
Candidatus Bandiella euplotis
Pathway
bwf03030
DNA replication
bwf03410
Base excision repair
bwf03420
Nucleotide excision repair
bwf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bwf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Bandiella_00922
03410 Base excision repair
Bandiella_00922
03420 Nucleotide excision repair
Bandiella_00922
03430 Mismatch repair
Bandiella_00922
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bwf03032
]
Bandiella_00922
03400 DNA repair and recombination proteins [BR:
bwf03400
]
Bandiella_00922
Enzymes [BR:
bwf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Bandiella_00922
DNA replication proteins [BR:
bwf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Bandiella_00922
DNA repair and recombination proteins [BR:
bwf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Bandiella_00922
NER (nucleotide excision repair)
GGR (global genome repair) factors
Bandiella_00922
MMR (mismatch excision repair)
DNA ligase
Bandiella_00922
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Bandiella_00922
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
Nlig-Ia
DNA_ligase_ZBD
HHH
HHH_5
PTCB-BRCT
HNOB
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
WPX96794
LinkDB
All DBs
Position
complement(670467..672446)
Genome browser
AA seq
659 aa
AA seq
DB search
MDILEIQNKVQKLKNEIKKHDELYYIKSAPVITDQQYDELKQELQKLEELYPQLSSVQTV
GGGVAKGFRKIKHTYPMLSLSNAFTADEVADFLLRVRRLTTENVELYCEPKIDGLSFAAR
YKDGELKVAATRGDGEVGEDITKNILTLPDFPLNVPTREEFEVRGEVYMGKQDFLVLNGM
CAAQNKALFANPRNAASGSLRQLDPNVTKERRLSYFVWGGRISGIGTQSEMMSRFKSLGF
LVNVNTQICSQQEEIMEYYEVMYKKRAELNYDIDGLVYKVNSIKLQEAMGSISRAPRWAL
AHKFPAEHAQTEVEDIFVQVGRTGAITPVAKLKPVNLGGVLVTRASLHNEDEILRKDIRI
GDVVSIKRSGDVIPQVVQVHAEQRKNNVREFNFPQNCPVCGSLIEGIDGDVVKRCTGGIR
CEAQVIERICHFVSKEAFDIVGLSRQSITQFHAELLVESPCDIFRLQSHVLEKLDGWGEQ
SAENLMEAIEKAKNIELHRFIYALGIRHVGVVTAEIIADYFKEIGNLMVCNSVETLETID
GIGPVIARSLHEFSQDSYNQQLVKNLLQYVNIRHTKTQATIESELYGKVMVFTGTLSKYS
RDDAQDIAKKFGAKVTSSISKNTDIVVVGANPGSKLQKAQGLGVKTMTEDEFEEVVSRR
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
gtggatatattagaaatacaaaataaggtgcaaaagctaaagaacgaaattaaaaagcat
gatgagttgtattatataaaaagcgctcctgttatcacagatcaacagtatgatgaatta
aagcaggaactacagaaacttgaagagctgtacccacagttaagttcagttcaaactgtg
ggtgggggggtagctaaaggctttagaaaaataaaacatacatatcctatgctatctctt
agcaacgcgtttacagcggatgaagttgctgattttttattaagggtcagaagattaact
actgaaaatgtagaactttattgtgaaccaaaaatagacggtctctcttttgcggcgcgt
tacaaggatggggaattaaaagttgccgcaactcgcggtgatggcgaggtgggagaagat
atcacaaaaaatattctaacactgccagactttcctctgaatgttcctactagagaggaa
tttgaagtgcgtggagaggtttacatgggtaaacaagacttccttgttttaaatggcatg
tgtgctgcgcaaaataaggcgcttttcgccaaccctaggaatgctgcttctggttcttta
agacaacttgatccaaatgttactaaagaaagaaggctgagttactttgtttggggtgga
agaatctcaggcataggcacgcaaagcgagatgatgtccagatttaaatcacttggattc
ctcgttaacgtcaacacgcagatttgcagccaacaggaagagataatggagtattatgag
gtgatgtataagaaaagagcggaacttaattatgatatagatggccttgtttacaaggtg
aatagcataaaattacaagaagcaatgggaagtataagccgtgcccctagatgggcactt
gcacataaattccctgctgagcacgctcaaacagaagtggaggacatatttgtacaggta
ggtaggactggggccatcactccagttgcaaagttaaaaccggtaaatttaggtggggta
ttggtcacaagagcgtcacttcataatgaggatgaaattttgaggaaagacataagaatt
ggtgacgttgtgtcaatcaaaaggtctggggatgtcatcccacaggtggtacaagtgcac
gcagagcagaggaaaaataatgttcgtgaatttaattttccacaaaattgtccagtttgt
ggtagcttgatagaaggcattgatggtgacgttgtcaaaaggtgtaccgggggtataaga
tgtgaggcgcaagtaatagagagaatatgccattttgtttcaaaagaagcctttgacatt
gttggtttgtccagacagtctataacgcagtttcatgccgagttgttggtggaatcgccc
tgcgacatattccgtctgcaaagtcacgtattagagaaactggatggttggggtgaacag
tctgctgaaaatttaatggaggcaattgaaaaggccaagaacatagagcttcacaggttt
atctacgcattaggtattaggcatgttggtgttgttacagccgagattattgctgattac
tttaaagaaataggcaatcttatggtatgcaatagtgtagagacgctagaaactattgac
ggcattggccctgtgatcgctagaagcctacatgaattttctcaagatagttacaaccag
caattggtgaaaaatcttttgcagtatgttaacataaggcataccaaaactcaggctaca
atagaatcagaactttatggcaaggttatggtttttacaggaacactcagtaaatatagc
agagatgatgcgcaagatattgctaaaaaatttggggctaaagtcacttcctcaatttca
aaaaacacagatatagtagttgttggggcgaacccagggtcaaagttgcaaaaagcacaa
ggtttaggtgtaaaaaccatgacagaggatgaatttgaagaagttgtgtctcgtcggtga
DBGET
integrated database retrieval system
