Bacillus mycoides WSBC 10204: bwei_5680
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Entry
bwei_5680 CDS
T03453
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bww
Bacillus mycoides WSBC 10204
Pathway
bww03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bww00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
bwei_5680 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bww03400
]
bwei_5680 (mfd)
Enzymes [BR:
bww01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
bwei_5680 (mfd)
DNA repair and recombination proteins [BR:
bww03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
bwei_5680 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
TniB
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AIW88191
UniProt:
A0A0A0WUV5
LinkDB
All DBs
Position
5425440..5428970
Genome browser
AA seq
1176 aa
AA seq
DB search
MIGLLEQFYKNEEIQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKQSQLIVTHNL
YQAQKVHEDLVALLGEKDVWLYPVNELIASEVGVASPELKAQRIEVLNRLAAGENGIIVA
PVAGLRRFLPIKELWKQRQIEINLGQEIDLDALLHTLHHIGYERKSMVEAPGDFSLRGGI
LDIYPLTEELPFRIEFFDTQVDSIRLFDVEEQRSQDKRESVRFGPATEFLFSQEELKSGI
KHLEEGLTKTMQKLSDDKLKTTVLETVSHELEMLKNGQSIEQMFKYLSIFYKEPASLIDY
LPENGVVILDEISRIQETASHLETEEAEWYISLLGEGTIIQDLSFSHSFEEFLHNKKRSF
VYLTLFLRHIAHTHPQNIVNVTCKTMQDFHGQMHLLKTEIDRWNEGNFTTVVLGTDDERV
KKLQHILSDYDIDADIVEATDILLPGRLQIAVGDLHAGFEMPMQKFVVITEKELFHKKVK
KSQRKQKLSNAERIKSYSELKVGDHVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND
KLYVPIEQIDQVQKYVGSEGKEPKVYKLGGNDWKKVKTKVEKSVQDIADDLIKLYAEREA
SKGYAYTPDTAEQQEFESLFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEV
AIRAAFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIK
GLKDGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYN
RVEDIERKADEISMLVPDARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDI
PNVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTVN
VEIDLEVDAYLPDAYISDSKQKIMMYKQFRGISAIEDIEELQEEMIDRFGDYPQEVGYLL
QIANIKVLAMKEQIELIKQNKFEVTFLFSEQASQNIDGGKLFMLGSSFGRMIGLGMEGSQ
LKIVMKTNGLETSKWLTIAENLLKGLPDVKKEVINA
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgataggtttattagagcaattttataaaaatgaagaaatacaatcggttattaatggg
ctagaagatgggttgaaagaacaacttgtatcgggtatggcaacatcctctcgttcatta
ttaatggcagctttatataaaaagacaaagcaatcacaacttatcgtgacgcacaattta
taccaagcacaaaaagtacatgaagatttagtggcgttacttggtgaaaaagatgtttgg
ctatatccggtaaatgaattgatagcatcggaggttggtgttgcaagtccagaattgaag
gcacagcgtattgaagtgttaaatcgcttagctgcaggagagaatgggattattgtagcg
ccagttgcagggctgcgtaggtttttaccaataaaagaattatggaagcaaaggcaaatt
gaaatcaatctagggcaagagattgatttagatgcactcttgcataccttacatcatatt
ggttatgagcgtaagtcaatggtagaagctccaggagattttagtttgcgcgggggaata
ttagatatttacccattaactgaagaattaccatttcgtattgaattctttgatacacag
gttgattctattcgattatttgatgtggaagaacagcgctctcaagataaaagggaaagt
gttcggtttggtccggcaacagagtttttattttcacaggaagaattgaaatcgggaatt
aagcatcttgaagaaggtttgactaagacgatgcaaaagctttccgatgataaattaaag
actactgtgcttgagacggttagtcatgaacttgaaatgttgaaaaacgggcaaagtata
gaacaaatgtttaaatatttatctattttctataaagaacctgctagtctgatagattat
ttaccagaaaatggtgttgtaattttagatgagatttcccgtattcaagaaacagcatca
catcttgaaacagaagaagcggaatggtatatctcacttcttggcgaaggaacaattatt
caggatttatctttctcccactcgtttgaggagtttcttcataataaaaaaagaagtttt
gtatatttaacgttattcttacgccatatagcacacacacatcctcaaaatattgtgaat
gtgacatgtaaaacgatgcaagatttccacggacagatgcatttgttaaaaactgaaatt
gatagatggaatgaaggtaattttacgaccgttgtgcttggaacagatgatgaacgtgta
aaaaaactacaacatattttaagtgattatgatattgatgcagacattgtagaggcgaca
gatatcttattgcctggaaggttacaaattgctgtaggtgatttacatgcaggctttgaa
atgccgatgcaaaagtttgttgtcattactgaaaaggagctttttcataagaaggttaaa
aaatcacaacgtaagcaaaagttatctaacgctgaacgtattaaaagttattcggaatta
aaagttggagaccatgtagttcatgtaaatcatggtataggtaaatttttaggtattgag
acattagagattaatggtgttcataaagattatttaaatattaaatatcaaggtaatgat
aagttatacgttccaattgaacaaattgatcaagtgcaaaaatacgtagggtctgaaggt
aaggaaccaaaagtttataaattaggcggaaatgattggaagaaggtcaaaacgaaagtt
gaaaaatctgtacaagacattgcagatgacctaattaaattatatgccgagcgtgaagct
tcgaaaggttatgcatatacaccagatacggcagagcaacaagagtttgaatctttattc
ccatatcaagagacagaggatcaattacgttctattgaagagattaagaaagatatggaa
cgcggacgtccgatggataggcttctttgtggtgacgtaggatatggaaagactgaagta
gctattcgtgcggcatttaaagcaattatggatgaaaaacaagttgcgattttagtacca
acaacaatccttgcacaacaacactatgaaacaattcgagagcgttttcaagattatccg
attaatatagggttactaagtagattccgtacacgaaaacaacaaaatgaaacgattaaa
ggtttaaaagatggaacggtggatattgtaatcggaacgcatcgtattttatctaaagat
gttacttataaagatttaggacttcttattattgatgaagaacaaagattcggcgttaca
cataaagaaaaaattaaacaattgaaagcaaatgttgacgtgttaacattaacggcaact
ccgattccacgtacacttcatatgtctatgcttggtgtgcgcgatttatctgttattgag
acaccaccagagaatcgtttcccagtacaaacatatgtagtagagtataatccagcgtta
atgcgagaagcgatagagcgagagttagcaagaggcggtcaaatttacttcctatataac
cgtgtggaggatattgaaagaaaagcagatgaaatttcgatgttagttccagatgctcgt
gtaacatacgcacatgggaaaatgaatgaaggtgaattagagtctgttatgctatcgttt
ttagaagggcagcatgatgttcttgtaagtacaacaattattgagacgggtgtagatatt
ccgaatgtaaatacattaattgtatttgatgcagatcgtatgggattatcgcagttgtat
cagcttcgtggtcgtgttgggcgttctaatcgcgtcgcgtatgcatactttgcatacaaa
cgtgataaagtgttatcggaagttgcagagaggcgtctgcaagcaattaaagagtttaca
gagcttggatctggtttcaaaattgcgatgagagacttatcaattcgtggtgcgggtaat
ttgttaggggcagaacaacatggatttattgattctgtcggatttgatctatattctcaa
atgttaaaagatgcaattgagcaacgtagaggaacagacggagttgaaaataccgttaat
gttgaaattgatttagaagtagatgcatatttaccggatgcgtacatttcagatagtaaa
caaaaaattatgatgtataaacaatttagaggtatttctgcaattgaagatattgaagag
ttgcaggaagagatgatcgacagatttggtgattatccacaagaagttggttatttatta
caaattgcaaacattaaagtgttggcaatgaaagaacaaattgagttaattaagcaaaat
aaatttgaagtaacattcctgttttctgaacaagcgagccaaaatatagatggtggaaaa
ttattcatgctaggaagtagttttggccgtatgatcggtcttggtatggaggggtcacaa
ttgaaaattgtgatgaaaacgaatggattagagacgtcgaaatggttaacaattgctgaa
aatttattaaaaggcttgccagatgtaaaaaaagaagtaataaatgcctaa
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integrated database retrieval system
