Bacillus xiamenensis: BK049_04675
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Entry
BK049_04675 CDS
T04852
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bxi
Bacillus xiamenensis
Pathway
bxi03030
DNA replication
bxi03410
Base excision repair
bxi03420
Nucleotide excision repair
bxi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bxi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BK049_04675 (ligA)
03410 Base excision repair
BK049_04675 (ligA)
03420 Nucleotide excision repair
BK049_04675 (ligA)
03430 Mismatch repair
BK049_04675 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bxi03032
]
BK049_04675 (ligA)
03400 DNA repair and recombination proteins [BR:
bxi03400
]
BK049_04675 (ligA)
Enzymes [BR:
bxi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BK049_04675 (ligA)
DNA replication proteins [BR:
bxi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BK049_04675 (ligA)
DNA repair and recombination proteins [BR:
bxi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BK049_04675 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BK049_04675 (ligA)
MMR (mismatch excision repair)
DNA ligase
BK049_04675 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BK049_04675 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
Nlig-Ia
PTCB-BRCT
RNA_pol_A_CTD
HHH_8
BRCT_2
HHH_3
CTD11
Motif
Other DBs
NCBI-ProteinID:
AOZ88055
UniProt:
A0AAC9IEJ0
LinkDB
All DBs
Position
complement(931596..933602)
Genome browser
AA seq
668 aa
AA seq
DB search
MDKEAAKRRIEELHQILNQYNYEYHTLDRPSVPDAEYDARMRELISLEEEHPDLKAADSP
SQRVGGAVLDAFQKVRHGTPMLSLGNAFHEQDLLDFDRRVRQAVGDDVAYNVELKIDGLA
VSLRYENGVFVRGATRGDGTIGEDITENLKTIRSIPLKINRPLSIEVRGEAFMPKPSFEA
LNEIRLQNEEEPFANPRNAAAGSLRQLDTKIAAKRNLDIFVYSIAELDEIGVDTQSAGLD
LLDELGFKTNKERRTCQTIEEVIDLIETLKTKRADFSYEIDGIVIKVNSLAQQEELGFTA
KSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAILEPVKVAGTTVQRASLHNEDLI
KEKDIRLLDQVIVKKAGDIIPEVVGVLVDQRTGEEKPFHMPAECPECQSELVRIEGEVAL
RCINPECPAQIREGLIHFVSRNAMNIDGLGERVITQLFKERLVSRVSDLYRLTKEELIQL
DRMGEKSVDNLLRSIEQSKENSLERLLFGLGIRFIGSKAAKTLAMHFEDIDQLKQATKEQ
LLEVDEIGEKMADAVVTYFEKEEILDLLNELKELGVNMTYTGPKPVKAEESDSYFAGKTI
VLTGKLEVMSRNDAKAAIEALGGKLAGSVSKKTDLVIAGEAAGSKLTKAEELNIEIWDEA
KMLEELKK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggataaagaagcagcgaaacgccggatcgaggaactgcaccagattttgaatcaatac
aactacgaatatcacacactggatcgtccaagtgttcctgacgctgaatatgatgcgcgg
atgcgtgagctgatctctctagaggaagaacaccctgatttaaaagcagcggattcaccc
tcgcaaagagtaggaggcgctgttttagacgcctttcaaaaggtacgtcacggcacgccg
atgctcagccttggcaatgcgtttcatgaacaggatcttcttgattttgaccgccgggtt
cgtcaggcagtcggtgacgacgtcgcttacaatgttgagctgaaaattgacggactcgct
gtttctctccgttatgaaaatggggtgtttgttcgaggtgccacgcgtggtgatgggaca
attggtgaggatattaccgaaaaccttaagaccattcgttcgattccgctcaaaatcaat
cgtcctctgtcgattgaagtgagaggcgaggcatttatgcccaaaccttcttttgaagca
ttaaatgaaataagattacaaaacgaagaagaaccgtttgccaacccgcgtaatgcggct
gccggctcacttcgtcagcttgatacgaaaattgcagcgaaacgaaatctggatatcttc
gtctacagtatagcggagcttgatgaaatcggtgtcgacacgcaaagtgcaggacttgat
cttctcgatgagcttggttttaaaacgaacaaagaaagacggacgtgtcaaacaattgaa
gaagtgatcgacctcattgaaacactgaaaacaaagcgtgcggatttctcatatgaaatt
gatggcattgtcattaaagtcaattcattggctcagcaggaagaactaggcttcacagca
aaaagtccaaggtgggcgattgcgtacaagttccctgctgaagaagtcgtgacgaaactg
cttgatattgagttaaatgtcgggcgtacaggcgtcatcacaccgacagcgatacttgag
cctgtaaaggtggcagggacaacagtgcagcgtgcttctcttcataatgaagatttgatc
aaagaaaaggatattcgtcttcttgatcaagtcatcgtgaagaaagcgggcgatattatt
cctgaagtcgtaggcgtccttgtcgatcagcgtacaggagaagagaagccatttcacatg
ccggctgaatgtccagaatgtcaaagtgagttagtgagaatcgaaggagaagtagcactg
cggtgcatcaatccagaatgtcccgcccaaatacgtgaaggcctcattcactttgtgtct
cgcaatgccatgaacattgatggacttggggaacgggtcattacacagcttttcaaagaa
cggctcgtgtcgcgggtgtctgatctttaccgattaacgaaagaggagctcattcaactt
gaccgaatgggcgagaaatcggtcgataacttactgcgttcgatcgagcaatcgaaagaa
aactctcttgaacgattactgtttggactcggcattcgatttatcggctctaaagcggcg
aagacgttggcgatgcatttcgaggatatcgatcagttaaaacaagcgacgaaagaacaa
ttactcgaagtcgatgaaattggtgaaaaaatggccgatgcagtcgtcacgtactttgag
aaagaagaaatactggatctgctaaatgaacttaaagaacttggagtcaatatgacctac
acaggaccaaagcctgtgaaagcagaggaaagtgattcctactttgctggcaaaaccatt
gtgctgaccgggaagctggaggtcatgtctcgaaacgacgcaaaggcggcgatcgaagca
ttaggcggcaagttagcaggtagtgtgagtaaaaaaacagacttagtcattgccggtgaa
gcagctggaagtaagctgacaaaggcggaagaactcaatattgaaatatgggatgaagcc
aaaatgctcgaggagctaaagaaataa
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