Bradyrhizobium xenonodulans: I3J27_28430
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Entry
I3J27_28430 CDS
T09324
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bxn
Bradyrhizobium xenonodulans
Pathway
bxn03030
DNA replication
bxn03410
Base excision repair
bxn03420
Nucleotide excision repair
bxn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bxn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I3J27_28430 (ligA)
03410 Base excision repair
I3J27_28430 (ligA)
03420 Nucleotide excision repair
I3J27_28430 (ligA)
03430 Mismatch repair
I3J27_28430 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bxn03032
]
I3J27_28430 (ligA)
03400 DNA repair and recombination proteins [BR:
bxn03400
]
I3J27_28430 (ligA)
Enzymes [BR:
bxn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
I3J27_28430 (ligA)
DNA replication proteins [BR:
bxn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
I3J27_28430 (ligA)
DNA repair and recombination proteins [BR:
bxn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
I3J27_28430 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
I3J27_28430 (ligA)
MMR (mismatch excision repair)
DNA ligase
I3J27_28430 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
I3J27_28430 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_2
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
WBL76922
UniProt:
A0ABY7MJV1
LinkDB
All DBs
Position
complement(5989266..5991413)
Genome browser
AA seq
715 aa
AA seq
DB search
MARAAKSKPLRDVADLTKPQAKVEHMRLALEIEGHNERYYQEDAPSVTDAEYDALRQRLN
AIEKRFPEFASAESPSQKVGAAPSGRFKKVRHSVPMLSLDNAFAEEDVRDFVGRIVRFLK
LDDDKVDFSAEPKIDGLSMSLRYEGGELVTAATRGDGAVGEDVTANIRTLEDVPQKLGGR
NVPDICEVRGEVYMTKKAFLALNERQKAAGDTIFANPRNSAAGSLRQKDPTITASRPLGF
FAYAWGEMSAMPEGTQSGMIGWFERCGFKTNPLTKLCHSVEELLAFHHAIEEQRARLDYD
IDGVVYKVDRIDWQERLGFVSRTPRWGIAHKFPAERAMTVLRDIEIQVGRTGSFTPVGKL
EPVGVGGVIVQNVTLHNEDYIKGIGNKGEVLREGRDIRIGDTVVIQRAGDVIPQVVDVVL
DKRPKTAKEFHFPKKCPCPLHTDVTRGETAAGEEESRARCTGEFACPYQKIEHLKLFVSR
RAFDIDGLGEKQLQHFFDEEWVREPAEIFTLEKRNSKLKLEEIEGYGETSVRNLFGAIES
RRRIALERFIYALGMRHVGETTALALARGYGSWEAFHDACLKVAKGDEEAMAEMDALDQI
GDTVIKSIADYFGESHNRGIVERLTKEVEIVDAEKPKSNSAVAGKTVVFTGSLEKMTRDE
AKATAERLGAKVSGSVSKKTDLVVAGPGAGSKLAEANKHGVKVLTEDEWLTLIGE
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atggcaagagcagcaaaatccaaaccgcttcgcgacgtcgccgacctgaccaagccgcag
gccaaggtcgagcatatgcggctcgcgctcgagatcgaggggcacaacgagcgctactac
caggaggacgcgcccagcgttaccgacgccgaatacgacgcgctgcgtcagcgtctcaat
gcgatcgaaaagcgctttccggaattcgccagcgcggaatcgccttcgcagaaggtcggc
gcggcgccctcgggccgcttcaagaaggtgcggcactccgttccgatgctgtcgctcgac
aacgcctttgccgaagaggacgtccgcgacttcgtcggccgcatcgtgcgtttcctgaag
ctcgacgacgacaaggtcgacttctccgccgaaccgaagatcgacggcctctcgatgtcg
ctgcgctatgagggcggcgagctcgtcaccgccgcgacgcgcggggacggtgcggtaggc
gaggacgtcaccgcaaatatccgcacgctcgaagacgtgccgcagaagcttggggggcgc
aacgtccccgacatctgcgaggtgcgcggcgaggtctacatgaccaagaaggcgttcctc
gcgctcaacgagcggcagaaggcggcaggcgacaccatcttcgccaatccgcgcaactct
gccgcgggctcgctgcggcagaaggacccgaccatcaccgcctcgcgtcccctgggcttc
ttcgcctatgcctggggcgagatgagtgcgatgcccgagggcacgcagagcggcatgatc
ggctggttcgagcgctgcggcttcaagaccaatccgctgaccaagctgtgtcactccgtc
gaagagctgctcgcgttccatcacgcgatcgaggagcagcgcgcacggctcgactacgac
atcgacggcgtcgtctataaggtcgaccgcatcgactggcaggagcgcctcggcttcgtc
tcacgcacgccgcgctggggcattgcgcacaaattcccggccgagcgcgccatgacggtg
ctgcgcgacatcgagatccaggtcggccgcaccggctcgttcacgccggtcggcaagctc
gagccggtcggcgtcggcggcgtgatcgttcagaacgtcacgctgcacaacgaggactac
atcaagggcatcggcaacaagggcgaggtgctgcgcgagggccgcgacatccggatcggc
gacaccgtcgtgatccagcgcgccggcgacgtcattccgcaggtggtcgacgtcgtgctc
gacaagcggccgaagaccgccaaggaattccacttcccgaaaaagtgcccgtgcccgctg
cacaccgacgtcacccgcggggagacggccgccggcgaggaagaatcgcgcgcccgctgc
accggcgagttcgcctgcccctatcagaagatcgagcatctcaagctgttcgtgtcgcgc
cgcgccttcgacatcgacggcctcggcgagaagcagcttcagcatttcttcgacgaggag
tgggtgcgggagcccgccgaaatcttcacgctggaaaagcgtaactcgaaactcaagctc
gaggagattgaaggctacggcgaaacctcggtgcgcaatctgttcggtgccatcgagagc
cggcgcagaatcgcgctggagcgcttcatctatgcgctcggcatgcgtcatgtcggcgag
accacggcgctggcgctggcgcgcggctacggctcgtgggaggccttccacgacgcctgt
ctcaaggtcgccaagggcgacgaggaggcgatggcggagatggacgcgctcgaccagatc
ggcgacaccgtgatcaagagcatcgccgattatttcggcgagagccacaatcgcggcatc
gtcgagcggctgacgaaggaggtcgagatcgtcgacgccgagaagcccaaaagcaactcc
gctgtcgccggcaagaccgtggtgttcacgggatcgcttgagaaaatgacgcgggatgaa
gccaaggccaccgcggagcggttgggcgccaaggtgtcgggttcggtgtcgaagaagacg
gatctcgtcgtcgccggccccggtgcgggctcgaagctcgcggaagccaacaagcatggc
gtcaaggtgctgaccgaggacgaatggctgacgctgatcggggagtga
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