KEGG   Bacteroides zoogleoformans: C4H11_01875
Entry
C4H11_01875       CDS       T05371                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
bzg  Bacteroides zoogleoformans
Pathway
bzg03030  DNA replication
bzg03410  Base excision repair
bzg03420  Nucleotide excision repair
bzg03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bzg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    C4H11_01875
   03410 Base excision repair
    C4H11_01875
   03420 Nucleotide excision repair
    C4H11_01875
   03430 Mismatch repair
    C4H11_01875
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bzg03032]
    C4H11_01875
   03400 DNA repair and recombination proteins [BR:bzg03400]
    C4H11_01875
Enzymes [BR:bzg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     C4H11_01875
DNA replication proteins [BR:bzg03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     C4H11_01875
DNA repair and recombination proteins [BR:bzg03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     C4H11_01875
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     C4H11_01875
   MMR (mismatch excision repair)
    DNA ligase
     C4H11_01875
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      C4H11_01875
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD Nlig-Ia PTCB-BRCT HHH BRCT_2 rve_2 HHH_8 Auto_anti-p27
Other DBs
NCBI-ProteinID: AVM53906
LinkDB
Position
429239..431236
AA seq 665 aa
MTAKEKIDSLRAELHRHNYNYYVLNAPEISDKEFDDMMRELQEIEQSHPEYQDNNSPTMR
VGSDINKNFTQVVHKYPMLSLGNTYSEGEVTDFYERVKKLLNEDFEICCELKYDGTSISL
TYEDGKLICAVTRGDGEKGDDVTDNVKTIRSIPLILHGNYPKTFEIRGEILMPWVVFEEL
NHEKEAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGEDLPFDGHYENLQAA
SKWGFKMSEHTKKVRSLNEIFEYINYWNTERKKLPVATDGIVLKVNSLRQQKNLGFTAKS
PRWAIAYKFQAERALTRLNKVSYQVGRTGAVTPVANLEPVLLSGTVVKRASLHNADIIDG
LDLHMGDMVYVEKGGEIIPKITGVDKDARTMLIGEKVKFITHCPECGSKLIRYEGEAAHY
CPNETACPPQIKGKIEHFISRKAMNIDGLGPETVDAFYRLGLIKDTADLYHLQIGDIKNL
ERMGEKSAENIINGIAASKEVPFERVLFALGIRFVGETVAKKITKSFTDIEELENANLEK
LKNIDEIGEKIAQSIVTYFSNSSNRELVARLKESGLQFCRQEENMSEHTEKLSGQSIVIS
GIFTHHSREEYKDLIEKNGGKNVGGISSKTSFILAGDNMGPAKLEKAQKLGIKIVSEDEF
LTLIS
NT seq 1998 nt   +upstreamnt  +downstreamnt
atgactgcaaaagaaaaaatagacagcctccgtgccgaactgcatcggcataactacaat
tattatgtgctcaatgctccggaaatatcagataaggagtttgatgacatgatgcgtgaa
ctgcaagagatagaacagagtcatcctgaataccaagataataactcgcccacaatgcgg
gttggaagcgacataaacaagaacttcacacaggtagtgcacaaataccccatgctctca
ttaggaaatacctactccgaaggtgaagtaaccgatttctatgaaagagtgaagaaattg
ctgaatgaagatttcgaaatatgttgcgaattgaaatacgatggtacctccatctcactg
acttacgaagacggcaaattgatatgtgccgtcactcgcggtgatggagaaaaaggtgat
gatgtcacggataatgtaaaaacaatccgcagcattccactgattcttcatggcaattat
ccgaaaactttcgaaatcagaggagaaattctaatgccctgggtggtttttgaagaattg
aaccatgagaaagaggctcgcgaagaacctctttttgccaatccgcgtaatgcggcctcg
ggtacactcaagctacaaaactccgccattgtagcctcccgtaagttggacgcttacctt
tactatcttctgggagaagatttacctttcgacggtcactatgaaaatctgcaagctgca
tctaagtggggatttaaaatgtctgaacacacgaaaaaagtgcgtagcttgaatgaaatc
tttgaatacatcaattattggaacaccgaacgcaaaaaactccctgtggccacggatggt
atcgtgctaaaggtgaatagtttgagacaacaaaaaaatcttggtttcacagccaaatct
cctcgttgggccatagcctataaatttcaggcagaacgtgccctaacacgcttgaacaaa
gtcagttatcaggtggggcgtaccggtgccgtgactcctgtagccaacctggaaccggta
ctgttgtccggcactgttgtgaaaagagcttctctgcataatgcagacattattgacggg
ttggatttacacatgggcgatatggtatatgtggaaaaaggcggtgaaattattcccaaa
ataaccggggttgacaaagatgcccgtaccatgcttatcggtgaaaaagtgaagtttata
acccattgtcccgaatgtggcagcaaactgatacgctatgaaggcgaagcggctcactat
tgtcccaatgaaacggcttgccccccccagattaaagggaaaatagaacattttataagc
cggaaagccatgaatatagatggattgggaccggagaccgtagatgcattctatcgatta
ggcctgataaaagataccgctgacctataccaccttcagatcggcgatataaagaacttg
gaacgtatgggcgaaaaatctgccgagaacatcatcaatggcattgcagcaagcaaagaa
gttccttttgaaagagttctttttgcgttaggcatacgctttgtgggcgagacagtggcc
aaaaaaataaccaaatcgtttacggacattgaggaattagaaaatgccaaccttgaaaag
ctgaaaaacatcgatgaaatcggtgaaaaaatagcccaaagcattgttacttacttctcc
aattcatccaatagagagttagtggcacgtttaaaagaaagtggcttgcagttctgtcgg
caagaagaaaatatgagcgaacataccgagaaattgtccgggcaatccatcgtaatcagc
ggtatattcactcaccactcaagagaagagtacaaagatttgattgagaaaaacggagga
aaaaacgtaggtggcatttcatccaagacaagttttatcttagccggtgataatatggga
cctgccaaattagaaaaagcacagaaattgggaataaagattgtgagcgaagatgagttt
ttgacgcttatttcctaa

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