Bacillus zhangzhouensis: NF868_02905
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Entry
NF868_02905 CDS
T08887
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bzh
Bacillus zhangzhouensis
Pathway
bzh03030
DNA replication
bzh03410
Base excision repair
bzh03420
Nucleotide excision repair
bzh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bzh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NF868_02905 (ligA)
03410 Base excision repair
NF868_02905 (ligA)
03420 Nucleotide excision repair
NF868_02905 (ligA)
03430 Mismatch repair
NF868_02905 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bzh03032
]
NF868_02905 (ligA)
03400 DNA repair and recombination proteins [BR:
bzh03400
]
NF868_02905 (ligA)
Enzymes [BR:
bzh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NF868_02905 (ligA)
DNA replication proteins [BR:
bzh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NF868_02905 (ligA)
DNA repair and recombination proteins [BR:
bzh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NF868_02905 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NF868_02905 (ligA)
MMR (mismatch excision repair)
DNA ligase
NF868_02905 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NF868_02905 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
RNA_pol_A_CTD
BRCT_2
HHH_3
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
UYO36172
LinkDB
All DBs
Position
581298..583304
Genome browser
AA seq
668 aa
AA seq
DB search
MDKEAAKRRIEELHQILNQYNYEYHTLDRPSVPDAEYDARMRELISLEEEHPDLKAADSP
SQRVGGAVLDAFQKVRHSTPMLSLGNAFNEQDLLDFDRRVRQAVGDDIAYNVELKIDGLA
VSLRYENGMFVRGATRGDGTTGEDITENLKTIRSIPLKIKRPLSIEVRGEVFMPKPSFEA
LNEKRIQNEEEPFANPRNAAAGSLRQLDTKIAAKRNLDIFVYSIAELDEIGVETQSAGLD
LLDELGFKTNKERRMCQTIEEVIDFIETLKMKRADFSYEIDGIVIKVDSLAQQDELGFTA
KSPRWAVAYKFPAEEVVTKLLDIELSVGRTGVITPTAILEPVKVAGTTVQRASLHNEDLI
KEKDIRYFDQVIVKKAGDIIPEVSGVLVDQRTGEEKPFHMPTECPECHSELVRIEGEVAL
RCINPECPAQIREGLIHFVSRNAMNIDGLGERVITQLFKEQLVSRVSDLYRLTKEELIQL
ERMGEKSVDNLLRSIEQSKENSLERLLFGLGIRFIGSKAAKTLAMHFENIDQLKQATKEQ
LLEVDEIGEKMADAVVTYFEKEEILDLLNELKELGVNMTYTGPKPVKAEESDSYFAGKTI
VLTGKLEEMARNDAKAAIEALGGKLAGSVSKKTDLVIAGEAAGSKLTKAEELNIEIWDEA
KMLEELKK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggataaagaagcagcgaaacgccggatcgaggaactgcaccagattttgaatcaatac
aactacgaatatcatacacttgatcgtccaagtgttcctgacgcggaatatgatgcgcgg
atgcgtgagctgatctctttggaggaagagcaccctgatttaaaagcagcggattctcct
tcacaaagagtaggcggcgctgttttagacgccttccaaaaagtgcgtcacagcacacca
atgctcagccttgggaatgcgtttaatgaacaggaccttcttgattttgaccgccgggtt
cgtcaagcagtcggtgacgatatcgcatacaatgtcgagctgaaaattgatggactcgct
gtttctctccgttatgaaaatggcatgtttgtcagaggagctacgcgcggtgatggaaca
acgggtgaggatattactgaaaacctcaaaacgattcgttccatcccgcttaaaatcaaa
cgccctctgtcgattgaagtgagaggcgaggtatttatgccaaaaccttcttttgaagca
ttaaatgaaaaaagaatacaaaacgaagaagagccgtttgcaaacccgcgtaatgcggct
gcaggttcacttcgtcagcttgatacgaaaattgcagcgaaacgaaaccttgatatattc
gtctacagtatagcggagcttgatgaaataggtgttgaaacgcaaagcgcaggacttgat
cttctcgacgaacttggctttaaaacaaacaaagaaagacggatgtgccaaacgatcgaa
gaagtaatcgacttcattgaaacattaaaaatgaagcgtgccgatttttcatatgaaatc
gatggaattgtcattaaagtcgattcactggctcagcaggacgaactcggctttacagca
aaaagcccgcgctgggcggttgcatacaagtttccggctgaagaggtcgtaacgaagctg
cttgatattgaactaagtgtcgggcgtacaggcgtgatcacaccaacagcgattcttgaa
cctgtcaaagtagcagggacgacagtgcagcgtgcgtctcttcataatgaagatttgatc
aaagaaaaggatattcgctattttgatcaagtgattgtgaaaaaagccggcgatattatt
cctgaagtctcaggtgtccttgtcgatcagcgtacaggcgaagaaaaaccgtttcacatg
ccgactgaatgtccagagtgtcatagtgagctggtgcgaatcgaaggtgaagtggccttg
cggtgcatcaatccagaatgtcctgcccaaatacgtgagggactcattcacttcgtttcc
cgtaatgcgatgaatattgatgggcttggcgagcgggtcattacccagcttttcaaggaa
cagctcgtttcgcgtgtgtccgacctttaccgattaacgaaagaagagctgattcagctt
gaacgaatgggcgaaaaatctgtcgacaatttactgcgatcgattgagcagtcgaaagaa
aactctcttgagcgtttactatttggactcggcattcgatttattggttcaaaagcggca
aagactttggcgatgcatttcgaaaacatcgatcaattaaagcaggcgacgaaagaacaa
ttacttgaagtcgacgaaattggtgaaaaaatggctgatgccgttgtcacgtactttgag
aaagaagaaatactcgacctgctgaacgaactaaaagagcttggagtcaatatgacctac
acagggccaaagccggtaaaggcagaagaaagtgattcctactttgcaggaaaaaccatt
gtgctgacaggaaaattagaagaaatggctcgaaacgatgcaaaagcagcgatcgaagca
ttaggcggcaagctggcaggtagtgtgagtaaaaaaacagatctagtcattgccggagaa
gcagcggggagtaagctgacaaaagcagaagaactcaatattgaaatttgggacgaagct
aaaatgctcgaggagctaaagaaataa
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