Chlamydia abortus S26/3: CAB589
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Entry
CAB589 CDS
T00242
Symbol
ligA
Name
(GenBank) putative DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cab
Chlamydia abortus S26/3
Pathway
cab03030
DNA replication
cab03410
Base excision repair
cab03420
Nucleotide excision repair
cab03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CAB589 (ligA)
03410 Base excision repair
CAB589 (ligA)
03420 Nucleotide excision repair
CAB589 (ligA)
03430 Mismatch repair
CAB589 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cab03032
]
CAB589 (ligA)
03400 DNA repair and recombination proteins [BR:
cab03400
]
CAB589 (ligA)
Enzymes [BR:
cab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CAB589 (ligA)
DNA replication proteins [BR:
cab03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CAB589 (ligA)
DNA repair and recombination proteins [BR:
cab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CAB589 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CAB589 (ligA)
MMR (mismatch excision repair)
DNA ligase
CAB589 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CAB589 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
Nlig-Ia
HHH_5
HHH
DNA_ligase_ZBD
PTCB-BRCT
HHH_3
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
CAH64037
UniProt:
Q5L5Q2
LinkDB
All DBs
Position
complement(674977..676959)
Genome browser
AA seq
660 aa
AA seq
DB search
MQSTYSREQYISLCKDIEEDDYRYYVLHNPTISDYDYDMKMRQLLSIEAQHPEWKVLWSP
SMRLGDRTSGSFPIVAHAHPMLSIANAYTLEELYEFFSRIEKTLGYTPKYTLEIKIDGIA
VAIRYEQRVLVQALSRGNGRKGEDITANIRTIRSLPLRLSKEAPEFLEVRGEVFFSRATF
CQINAAQRQAEKPEFANPRNAAGGTLKLLSAKEAAQRNLEISIYGSLAEENKRSHYENLL
LCKEWGFPVFGQPRQCQTIEKVVASLHEIEVARAQLPMEIDGVVIKVDDIEDQKVLGMTA
KHYRWALAYKYAPERAETILEDIIVQVGRTGVLTPVAKLRPVVLSGSRVSRASLYNEDEI
ERKDIRIGDTVYVEKGGEIIPQVVGVCLEKRPEGTQPWVMPEYCPVCHQKVTRESDKVSV
RCTNSLCSAGVIEKIRFFCGRDALDIDHLGEKVVTKLFDLGCIHRRCDIFQITEEDLRQV
PGFKDKSIRNVLKSIEKAKSVPLDRFITALGIPYVGIGGANALAQHFLSLESVMAASLDD
LKAIEGIGDKVAESIVAYFHQPEHLEEIQKMLSLGVHILPCHRASSSCLGKAFVITGTLE
KLTRSEAETYIRNCGGKVGSSVSKNTDYLVVGQDPGSKLKRAQELGVPILSEDELLKLLY
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagtacatattccagagaacagtatatctctctgtgtaaagatatcgaagaagat
gattatcgctattatgttcttcataatcccacaatctcagattatgactatgatatgaaa
atgcggcagcttctttctatagaagctcagcatcccgaatggaaagtcttatggtctcct
tctatgcgtctcggagatcgcacttcagggagcttccctattgtcgctcatgcgcaccct
atgctgtctatcgctaatgcctatactttagaagagctttacgagttcttttcccgtata
gagaaaacgttagggtatactcctaaatataccctagaaatcaaaatcgatggtattgcc
gtagctattcgttatgagcagagagttcttgtacaggctttaagccgtgggaatggacgt
aagggagaggatatcacagccaatatccgtacgatacgctcgcttcccctacgtttatcc
aaagaggctccagaattccttgaagttcgaggtgaggtgtttttttcacgagctactttt
tgccagataaatgctgcacaaagacaagctgagaaacctgaatttgcgaatccaagaaat
gctgcgggtggcactttgaaattgttatccgctaaggaagcagcacaaagaaatttagaa
atttctatttacggatcgttagcagaagaaaataagcgatcgcattatgagaatctcctg
ctgtgtaaggagtggggattccctgtatttggtcagccccgccagtgccaaactatagag
aaagtcgtcgcctctctccacgagatagaagtagcgcgagcgcaactccccatggaaatc
gatggtgtggtgatcaaagtagatgatatagaagatcaaaaagtcttaggaatgacagcg
aagcattatcgctgggcactggcgtacaagtatgcgccagaacgggctgaaactatttta
gaagacatcatagttcaggtaggcagaacgggggtgttgaccccagtggctaaactacga
ccggtagtgttgtcaggatctagggtttctagggcttctctatataatgaagatgaaatt
gagagaaaagatatccgtataggtgacactgtctatgtcgagaaggggggagaaattatt
cctcaagttgttggtgtttgcctagaaaagcgtccagaaggcacccagccttgggtgatg
cccgaatattgtcctgtttgtcatcagaaggtcactcgcgaatccgataaagtttctgtc
cgttgtacgaactccttgtgttctgcaggagttattgaaaaaatccgctttttttgtgga
agagatgctttagatattgatcatctcggtgaaaaagttgtgacaaagttatttgattta
gggtgcattcatcgacgctgtgatatttttcaaatcactgaagaagatctccgccaggtt
ccaggatttaaagataagtccataagaaacgttcttaaaagtatagagaaagccaaaagt
gtacctttagatcgttttattacggctcttggtattccttatgtgggtataggcggagcc
aacgctcttgctcaacattttctttctttagaatctgtgatggcggcctctttagatgat
ctgaaagctatagagggcatcggagataaggtggcagagtcgatagttgcgtattttcat
caaccagaacatctcgaagagattcaaaaaatgctttctctaggggtgcatattttacct
tgccatagggcaagctcttcttgtttagggaaagccttcgtgatcacgggaaccctggaa
aaattgactaggtccgaagcagaaacttacattcgcaattgtggcggtaaggtgggttcg
tccgtgtctaaaaacactgactatcttgttgtgggccaagatcccggatccaagttaaaa
agagctcaagaactgggagtccccattcttagtgaggatgagttgttaaaacttctttac
taa
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