Caballeronia sp. SBC2: SBC2_14430
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Entry
SBC2_14430 CDS
T06459
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
caba
Caballeronia sp. SBC2
Pathway
caba03030
DNA replication
caba03410
Base excision repair
caba03420
Nucleotide excision repair
caba03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
caba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SBC2_14430 (ligA)
03410 Base excision repair
SBC2_14430 (ligA)
03420 Nucleotide excision repair
SBC2_14430 (ligA)
03430 Mismatch repair
SBC2_14430 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
caba03032
]
SBC2_14430 (ligA)
03400 DNA repair and recombination proteins [BR:
caba03400
]
SBC2_14430 (ligA)
Enzymes [BR:
caba01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SBC2_14430 (ligA)
DNA replication proteins [BR:
caba03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SBC2_14430 (ligA)
DNA repair and recombination proteins [BR:
caba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SBC2_14430 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SBC2_14430 (ligA)
MMR (mismatch excision repair)
DNA ligase
SBC2_14430 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SBC2_14430 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
MctB
5_3_exonuc
TPGS1_C
Motif
Other DBs
NCBI-ProteinID:
QIE23419
LinkDB
All DBs
Position
1607557..1609653
Genome browser
AA seq
698 aa
AA seq
DB search
MSAKPKAAAKADSSVSTLSGAPIASAERPAERAAWLRTELERANYAYYVLDQPDLPDAEY
DLLFKELQQIEANQPELITPDSPTQRVGGQVATGFQPVTHDVPMLSLNNGFADEDIIAFD
KRVADMLGHTPVEYACELKFDGLAISLRYDNGIFVQAATRGDGATGEEVTENVRTIRSIP
LKLKGKNIPKRLDVRGEVLMFKRDFEKVNARQREAEQREFANPRNAAAGGLRQLDPKMTA
QRQLSFFAYGIGVLEGAEMPVSHSALLDWYKEMGLPVNAERGVVQGAEGLLEFFRKTGEK
RDGLPYDIDGVVYKVNQRDEQDKLGFVSRAPRFALAHKFPAQEALTQLLAIDVQVGRTGA
ITPVARLTPVFVGGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGAILDRRP
DDAREFVMPTECPVCGSKIERLPDEAIARCTGGLICPAQRKQALWHFAQRRALDIDGLGE
KIIDQLVEQNIVRTPADLFNLGVATLAALDRFADKSAQNLYDSLEKAKQTTLPRFLYALG
IRHVGESTAKDLAKHFGSLDPIMAASVEELLEVNDVGPVVAESLHNFFSEAHNQMVIEQL
RAPGKVTWPEGPPAPKAPQGVLAGKTVVLTGTLPNLSREDAKEMLEAAGAKVAGSVSKKT
DYVVAGAEAGSKLVKAEELGVPVLDEDGMRKLLEGETP
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccaaaccgaaagctgctgccaaagctgattcgtccgtctccactctgtccggt
gcgcccatcgccagtgccgagcggccggctgagcgcgccgcgtggttgcgcacggaactt
gagcgcgccaactacgcgtattacgttctcgatcagccggatctgcccgacgcagaatac
gatctcctgttcaaggaactgcagcaaatcgaggcaaatcagccggaattgatcacgccc
gattcccccacgcaacgcgtcggcggtcaggtcgcaacgggttttcagccggtcacgcat
gacgtgcccatgctttcgctgaacaacggtttcgctgacgaagacattatcgcgttcgac
aaacgggtcgccgatatgctcggtcacacgcccgtcgaatacgcgtgcgagctgaaattc
gacggcttggccatttccttgcgctatgacaacggcatcttcgttcaggcggccacgcgc
ggtgacggtgcgacgggcgaagaggtcaccgaaaacgtccgcaccatccgctcgatcccc
ctgaaactcaagggcaagaatattccgaagcggctcgatgtgcgcggcgaagtgctcatg
ttcaagcgcgattttgagaaggtcaacgcgcggcaacgcgaggccgaacagcgcgagttt
gcgaatccgcgtaatgcggcggctggtggtttgcggcaactcgatcccaagatgaccgcg
cagcgccagttgtcgtttttcgcttatggaattggcgtgctggaaggtgcggagatgccg
gtttcgcactcggcgctgctcgactggtacaaggaaatgggcctgccggtcaacgcggag
cgcggagtggtgcagggcgctgaaggcctgctcgagttcttccgcaagacgggcgagaaa
cgcgatggtttgccgtatgacatcgacggcgtggtctacaaggtcaaccagcgcgacgag
caggacaagctgggtttcgtttcgcgtgcaccgcgctttgcgctcgcgcacaaatttccc
gcgcaggaagcgctcacgcagttgctggctatcgacgttcaagtcggccgtacgggcgcc
atcacaccggtcgcgcgtctcacgcctgtgttcgtcgggggcgcgacggtaacgaatgcc
acgttgcataacgaagacgaggttcggcgcaaagacatacgtattggcgatacggtgatt
gtgcggcgtgccggcgatgttatccccgaagtggttggcgcgatcctcgaccggcgtccg
gacgatgcccgcgagttcgtgatgccgaccgagtgcccggtatgcggatcgaagatcgaa
aggctccctgacgaagccatcgcgcgttgcacgggcggcctgatctgtcccgctcaacgc
aagcaggcgttgtggcatttcgcgcagcggcgcgcgctggatatcgacgggctgggtgag
aaaatcatcgaccaactggtcgagcagaacatcgtgcgtacgccagcggacctgttcaat
cttggcgtggcgacgcttgccgctttggaccgtttcgccgataaatccgcccagaatctg
tacgattctctcgaaaaggcgaagcaaaccacgttgccgcgttttctgtacgcgctcggt
attcgtcacgttggagaatcgacggcgaaggacctcgccaagcatttcggctcgctcgat
ccgatcatggcggcgagcgtcgaggaattgctggaagtgaacgatgttggcccggtcgtg
gccgagtcgctgcacaattttttcagcgaagcgcataaccagatggtgatcgagcagctg
cgcgcgccgggcaaggtaacctggcccgaaggcccgcccgcgccgaaagcgccgcagggc
gtgctcgctgggaagacggtcgtgctcaccggcacgctgcctaatctgtcccgcgaagac
gcgaaggagatgctggaggcggcgggcgcgaaagtggcgggatcggtgtcgaagaagacg
gattacgtggtggcgggagcggaggcgggcagcaagcttgtgaaggctgaggaactcggc
gtcccggtgctcgacgaagatggtatgcgcaagcttttggagggagaaaccccatga
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