Chelonoidis abingdonii (Abingdon island giant tortoise): 116817879
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Entry
116817879 CDS
T07367
Symbol
SCN4A
Name
(RefSeq) sodium channel protein type 4 subunit alpha
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cabi04040
]
116817879 (SCN4A)
Ion channels [BR:
cabi04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
116817879 (SCN4A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
IQ
GPHH
FUT8_N_cat
Motif
Other DBs
NCBI-GeneID:
116817879
NCBI-ProteinID:
XP_032624246
Ensembl:
ENSCABG00000012490
LinkDB
All DBs
Position
Unknown
AA seq
1837 aa
AA seq
DB search
MAIPPHVPGPDNLRPFTRESLAAIEQRIAEAEALKIKRQHVEVLEEEELKASSNLEAGKP
LPRIYGDLPPELIGVPLEDLDPFYSDKKTFIVLNKGKAIFRFSTTPALYMLGPFNPLRRA
AIKVLIHSLFSMFIMITILTNCVFMAMSDPPPWAKNVEYTFTGIYTFESMIKIVARGFCI
DQFTFLRDPWNWLDFSVIVMAYTTEFVDLGNVSALRTFRVLRALKTITVIPGLKTIVGAL
IQSVKKLSDVMILTVFCLSVFALVGLQLFMGNLRQKCVRWPPPVNDTLQEDFFGMDNDTF
ANSTFYGNTTGLSNGTFDWDSYINDEGNFYFLEGSLDALLCGNSSDAGKCPEGYMCMKAG
RNPNYGYTSYDTFSWAFLSLFRLMTQDFWENLFQLTLRAAGKTYMIFFVVVIFLGSFYLI
NLILAVVAMAYAEQNDATMLEDQQREEEFQQLLEQLKKHQGEQEKLLRDRKSSSSSQSSS
AVEKKTGDSAPAVADNEGKSKDCKGRVIPRVMLEHSAMVEEPSSVDEQGKSDPDQLLAGT
QDGPGLQQRAESAVSMISNIMEELEEAHQKCPPWWYKFAHVFLVWDCCPLWLKLKAFVRL
IVMDPFVDLGITICIVLNTLFMAMEHYPMTKEFENVLTVGNLVFTGIFTAEMVLKLIALD
PYNYFQQGWNIFDSIIVTLSLVELGLANVQGLSVLRSFRLLRVFKLAKSWPTLNMLIKII
GNSMGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCKISLDCTLPRWHMHDFFHAFLI
IFRILCGEWIETMWDCMQVAGQPMCLIVFLMVMVIGNLVVLNLFLALLLSSFSADSLVAS
EDDGEMNNLQIAVGRITRAIDFVKRIVLMLLHLRWKQKREPAEEQEDNKKDNYVLNHMDS
GQDSKLEYMDGVAWKEQLFVDELDHMNFINNPNLTVQVPIASEESDLYDEETSTQSETED
TKKPLSSGSTSSMCSTVDYKAPEVEAEEAADEAAEGQGPEECFTEACVRRFPFLYVDITT
NKGKIWWNLRKTCFKIVEHNWFETFIVFMILLSSGALAFEDIYIEQRKVIRTILEHADKV
FSYVFVLEMVLKWVAYGFKVYFTNAWCWLDFLIVDVSIISLTANWLGYSELGAIKSLRTL
RALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYYRCIN
TTTDELFDISEVNNKSDCLALLHTNQVRWVNVKVNFDNVGLGYLSLLQVATFKGWMDIMY
AAVDSREIEEQPLYETNLYMYIYFVIFIIFGAFFTLNLFIGVIIDNFNQQKKKLGGKDIF
MTEEQKKYYNAMKKLGSKKPQKPIPRPHNKCQGLVFDIVTKQAFDIIIMVLICLNMVTMM
VETDDQSPTKISILYNINMIFIVIFTGECLLKMFALRYYYFTIGWNIFDFVVVILSIGGI
VLADIIEKYFVSPTLFRVIRLARIGRVLRLIRGAKGIRTLLFALMMSLPALFNIGLLLFL
VMFIYSIFGMSNFAYVKKESGIDDIFNFETFGNSIICLFQITTSAGWDGLLNPILNSGPP
DCDPDLENPGSSVKGNCGNPSIGICFFCTYIIISFLIVVNMYIAIILENFNVATEESSEP
LCEDDFEMFYETWEKFDPDATQFITYSVLSDFVDTLQEPLKIAKPNKIKLITMDLPMVVG
DKIHCLDILFALTKEVLGDSGEMDGLKATMEEKFMAANPSKVSYEPITTTLKRKHEEVCA
IKIQRAFRRYLLKRSMKQASYLYRHSQEGVMVFAEGAPEKEGLIADKMNEIYGNSDTHLE
TAPGLALAAPVASPETRAAPSEAKKQDEEREVKESLV
NT seq
5514 nt
NT seq
+upstream
nt +downstream
nt
atggcaatcccgccacatgtacccggtcctgataatctccgcccgttcacccgcgagtcc
ctcgctgccatagagcagcggattgctgaggcggaagcactcaagatcaaacggcagcat
gtggaagtgcttgaggaagaagagctgaaggccagcagcaatttggaagctgggaagccc
ctcccgcgcatttacggggacctgcctccagaactcataggggttcccttggaagaccta
gaccccttctacagtgataaaaagacattcatcgtcctaaacaaaggaaaagcaatcttc
cggttcagcacaaccccagccctatacatgttgggacccttcaatcccctcaggagagct
gccatcaaagtgcttatacattcattattcagcatgtttatcatgatcaccattttgacc
aactgtgtgttcatggcaatgagcgacccgccaccgtgggccaagaatgtggaatacacc
ttcactgggatatacacctttgaatccatgataaagatagtagccagaggattttgcatt
gaccaatttacattcctacgtgacccatggaactggctggatttcagtgttatcgttatg
gcttacaccacagaatttgtggatttgggaaatgtctcagctctacgaacgttccgtgtc
ctccgtgcactgaaaacaatcaccgtgattccagggctgaagacaattgttggagctttg
atacagtccgtgaagaagctctctgacgtcatgattctcaccgtcttctgtctgagtgtt
tttgcactggttggccttcagttgttcatggggaatcttcggcaaaaatgcgtcaggtgg
ccaccccctgtaaacgacactttgcaagaggacttctttggaatggacaacgacacgttc
gctaactcaactttctatggcaacacaactgggttgagtaatgggacttttgactgggat
tcttacatcaacgatgaagggaatttctactttctggagggctcgctggatgctctgctc
tgcgggaacagcagcgatgccgggaagtgccctgaaggatatatgtgtatgaaagcagga
aggaatccgaactatggctataccagctatgacacttttagctgggctttcctttctctc
ttccgcctcatgactcaggacttttgggagaatctcttccagctgaccctccgcgccgct
gggaaaacgtacatgatcttctttgtggtggtcatattccttggttccttctacctcatc
aacctgatcctggctgttgtagcgatggcctatgccgagcaaaacgatgctaccatgctg
gaggaccagcagagagaggaggaatttcagcagctcctggagcagctgaagaagcatcag
ggtgaacaagagaaactgttacgagaccgtaaatcaagcagcagctcccagagcagcagc
gcagtggagaagaagacaggggactctgccccagctgtggctgacaacgaaggcaaatcc
aaagactgcaaagggcgagtcatacccagggtcatgctggagcattcggcgatggttgag
gaaccaagttctgtggatgagcaaggcaagtcagatcctgatcagctgctagcaggcacc
caagacggacctggtctccagcagagagcagagagcgcagtcagcatgatctctaacatc
atggaagagttagaggaagctcaccagaaatgtccgccctggtggtataaattcgcccat
gtgttcctggtctgggactgctgccctctctggctgaagctgaaggcatttgtacggctg
atcgtgatggacccgtttgtcgacctggggatcacaatctgcattgttctcaacacgctg
ttcatggccatggagcactacccaatgaccaaagagtttgagaacgtgctaactgtgggg
aacctggtcttcactgggatcttcaccgcagagatggtactaaagctcatagccctggat
ccctacaactacttccagcaggggtggaacatatttgacagcatcattgtcaccctgagc
ttggtggagctgggcctggccaacgtgcaggggctctctgtgctccgatccttccgcctg
ctgagagttttcaagcttgccaagtcctggccaaccctcaacatgctcataaagattatc
ggcaactccatgggggctctaggaaatctcaccctggtactggccatcattgtcttcatc
tttgccgtggtgggcatgcagctgtttgggaagagctataaggagtgcgtgtgcaagatc
tctctggactgcacgctgccccgctggcacatgcacgacttcttccatgccttcctcatt
atcttccgcatcctgtgcggggagtggatcgagaccatgtgggactgtatgcaggtggct
ggccagcccatgtgcctcattgtcttcttgatggtcatggtcatcggaaaccttgtggtc
ctgaatcttttcttagctttgctgctgagctccttcagcgccgatagccttgtggcttct
gaggatgatggcgagatgaacaatttgcagattgctgtcggcaggatcaccagggcgatt
gactttgtaaagagaattgtcctcatgctacttcacttgcggtggaagcagaagagagag
ccagccgaggaacaagaagataataagaaagacaactatgtgctaaaccacatggattca
ggccaggattccaagttagaatatatggatggagtagcttggaaagagcagttgtttgtg
gatgagctggaccacatgaatttcattaacaaccctaacctgacagtccaagtgccaatt
gcttctgaggagtccgacctctacgatgaagaaacgagcactcagtcagaaacagaagac
accaagaagccgctgtccagcggcagcacgtcatccatgtgcagcactgtggattacaag
gcgccagaggtggaggcggaggaggctgcagacgaggctgctgagggccaggggcctgag
gagtgcttcactgaggcctgcgtgcggcgctttcctttcctctacgtcgacatcacaacc
aacaaagggaagatctggtggaaccttcggaaaacctgtttcaagatcgtcgagcacaac
tggttcgagacctttatcgtcttcatgatcctcctcagtagtggagcgctggcttttgaa
gacatctacattgagcagcggaaggtgatccgcacgatcctggagcacgctgacaaggtc
ttctcctacgtgtttgtcctcgagatggtactcaagtgggtggcctatggtttcaaggtg
tatttcaccaacgcctggtgctggctcgattttctcatcgtggatgtttccattatcagc
ttgacagcaaactggctgggctattccgaactgggcgccatcaaatcgctgaggactctg
agggctttgcgaccactgcgggctctgtcaagattcgaaggcatgagggtggtggtcaac
gcccttctgggtgccatcccctccattatgaacgtcctgctggtctgcttgatcttctgg
ctgatattcagcatcatgggggtgaacctgtttgcggggaaatactaccggtgcatcaac
accactacggatgagctctttgacatcagcgaggtgaacaacaaaagcgactgcctggcg
ctgctccacaccaaccaggtgcgctgggtaaacgtcaaggtcaactttgacaacgtgggc
ttgggctacctgtccctgctgcaggtggccaccttcaaaggctggatggacatcatgtat
gcggctgtggactcccgcgagattgaagaacagccgctgtatgagaccaacctctacatg
tacatctacttcgtcatcttcatcatcttcggcgccttcttcaccctcaaccttttcatt
ggtgtcattatcgacaacttcaaccagcaaaagaaaaagcttggagggaaggacatcttc
atgacggaagagcagaagaaatactacaacgccatgaaaaagcttggatcaaagaagccc
cagaagccaattcccaggccccataacaaatgtcaggggctggtgtttgacattgtgaca
aagcaagcttttgacatcatcatcatggtcctgatttgtcttaacatggtgaccatgatg
gttgaaacagatgaccaaagcccaaccaaaatcagcatcctctacaatatcaacatgatt
ttcatcgtcatcttcacgggcgagtgcttgctcaaaatgtttgccttgcgttattactat
ttcaccatcggctggaatatcttcgactttgtggtggtcatcctctccatcggaggtatc
gtccttgccgacatcatagagaagtactttgtgtcccccaccctcttcagggtgatcagg
ttggcacgaattgggcgtgttctgcggctgatccgaggagcaaaaggaatccggactctc
ttgtttgctttaatgatgtctctccctgctttgttcaacatcggcctcctgctgttcttg
gtgatgttcatttactccatcttcgggatgtccaactttgcctatgtcaagaaggagtct
gggatcgacgacatcttcaatttcgagacgtttgggaacagtatcatctgtttgtttcag
atcacgacatctgctgggtgggatggtctcctcaaccctatcctgaacagtggcccaccg
gactgcgacccagacttggagaatcccggaagttcagtaaaaggaaactgcggcaacccg
tctattggcatctgctttttctgcacctacatcatcatctcctttctgatcgttgtgaac
atgtacatcgccatcatcctggagaacttcaacgtggctacagaggagagcagcgaacca
ctctgcgaagatgactttgaaatgttctatgaaacgtgggagaagtttgatccagatgcc
acccagtttatcacgtacagcgtgctgtcagattttgtagacaccttgcaagagccactc
aagattgccaaaccaaacaagattaaattaatcaccatggatttaccgatggttgtcgga
gataaaatccactgtctggatattctctttgcactgactaaagaagtgctgggtgactca
ggagaaatggacggcttgaaagccacaatggaggagaaattcatggctgccaacccatcc
aaggtttcctatgaacccatcactacgactttgaaaaggaagcacgaagaagtctgtgcc
ataaaaatccaaagagccttccgaaggtatttactaaagcggtcaatgaaacaggcatct
tatctgtacaggcatagtcaggagggagtcatggtctttgcagagggagcaccggaaaaa
gaaggactaattgcagacaaaatgaacgagatttatgggaacagtgatacacacctggaa
acggccccaggcctggctcttgcagcaccagttgcaagcccagagactcgagctgctcct
agtgaggcgaaaaaacaggatgaggagcgagaggtgaaagagtcattagtataa
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integrated database retrieval system
