Caballeronia sp. NK8: NK8_11370
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Entry
NK8_11370 CDS
T09553
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cabk
Caballeronia sp. NK8
Pathway
cabk03030
DNA replication
cabk03410
Base excision repair
cabk03420
Nucleotide excision repair
cabk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cabk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NK8_11370 (ligA)
03410 Base excision repair
NK8_11370 (ligA)
03420 Nucleotide excision repair
NK8_11370 (ligA)
03430 Mismatch repair
NK8_11370 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cabk03032
]
NK8_11370 (ligA)
03400 DNA repair and recombination proteins [BR:
cabk03400
]
NK8_11370 (ligA)
Enzymes [BR:
cabk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NK8_11370 (ligA)
DNA replication proteins [BR:
cabk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NK8_11370 (ligA)
DNA repair and recombination proteins [BR:
cabk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NK8_11370 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NK8_11370 (ligA)
MMR (mismatch excision repair)
DNA ligase
NK8_11370 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NK8_11370 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
MctB
BRCT_2
5_3_exonuc
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
BCQ23014
LinkDB
All DBs
Position
1:1214491..1216515
Genome browser
AA seq
674 aa
AA seq
DB search
MPSADRPAERAAWLRSELERANYAYYVLDQPDLPDAEYDTLFKELQGIEAEHPDLITPDS
PTQRVGGEVAEGFTPVVHDVPMLSLNNGFADEDIAAFDKRVSDALGHVPVEYACELKFDG
LAISLRYEDGHFVQAATRGDGATGEDVTANVRTIRSIPLTLKGKNVPKRLDVRGEVLMFK
RDFERLNARQRDAGQREFANPRNAAAGGLRQLDPKMTAQRSLSFFAYGIGVLEGAEMPAT
HAALLDWYKEMGLPVNAERAVVQGADGLLAFFGKVGEKREKLPYDIDGVVYKVDRRDEQD
KLGFVSRAPRFALAHKFPAQEALTELLAIDVQVGRTGAITPVARLAPVFVGGATVTNATL
HNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGALLERRPADAGEFVMPTQCPVCGSKIERL
PDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQNLVRTPADLFNLG
FSTLAALDRFADKSAQNLIDSLEKASKTTLPRFIYALGIRHVGESTAKDLAKHFGSLDPI
MAASVEELLEVNDVGPIVAEAIHNFFGEAHNQHVIEQLRAKVSWPEGPPAPKAPQGVLAG
KTVVLTGTLPTLSREQAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGVPVL
DEDGMHKLLEGVTP
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
gtgccgagcgccgatcgtccggccgagcgcgcggcgtggttgcgctccgagctggagcgc
gcgaactacgcgtattacgtgctggatcagccggatctgcccgacgccgaatacgacacg
ctgttcaaagagcttcagggcatcgaggccgaacatccggacctgatcacgcccgattct
ccgacgcagcgcgtaggcggtgaagtcgccgaaggtttcacgccggtcgtccacgacgtg
ccgatgctttcgctcaacaacggcttcgcggacgaggacatcgccgcattcgacaagcgc
gtgtccgacgcgctgggtcacgtgcccgtcgagtacgcgtgcgagctgaagttcgatgga
ctcgcgatttccctgcgctacgaggacggccatttcgtgcaggccgcgacgcgcggcgac
ggcgcgaccggcgaagacgtcacggcgaacgtgcgaaccattcgctcgattccgctcacg
ctgaagggcaagaacgtgccgaagcggctcgacgtgcgcggcgaagtgctgatgttcaag
cgcgacttcgagcgcctgaacgcacgccagcgcgacgccgggcagcgtgaattcgccaat
ccgcgcaacgcggcggcgggcggtttgcgccagctcgacccgaagatgaccgcgcaacgc
tcgctgtcgttcttcgcgtacggcattggcgtgctggaaggcgccgagatgccggccacg
catgcggcgctgctcgactggtacaaggaaatgggcttgccggtgaatgcggagcgcgcg
gtcgtgcagggcgcggatggcttgctcgcctttttcggcaaggtcggcgagaagcgcgag
aagctgccgtatgacattgatggcgtcgtctacaaggtcgatcggcgcgatgagcaggac
aagcttggtttcgtgtcgcgcgcgccgcgctttgcgctcgcgcacaagtttcccgcgcag
gaagcgttgacggagttgctcgcgatcgacgtgcaggtgggccgcaccggcgcgatcacg
ccggtcgcgcggctcgcgccggtgttcgtcggcggcgcgacggtcaccaacgcgacgctg
cacaacgaggacgaggtgcgccgcaaggacatccgcatcggcgatacggtcatcgtgcgg
cgcgcgggcgacgtgattcctgaagtcgtcggcgcgctgctcgagcgccgtcccgccgac
gcgggcgagttcgtcatgccgacgcaatgcccggtctgcggatcgaagatcgagcgtctg
ccggacgaggcgatcgcgcgctgcacgggcgggctgttctgtccggcgcagcgcaagcag
gcgctgtggcatttcgcgcaacgccgcgcgctcgacatcgacgggctcggcgagaagatc
atcgatcagctggtcgagcagaatctggtgcgtacgcccgctgatctcttcaatctgggt
ttctcgacgctcgcggcgctcgaccgtttcgcggacaaatccgcgcagaacctgatcgat
tcgctggaaaaggcgagcaagacgacactcccgcgcttcatctatgcgctgggcatccgg
cacgtgggcgaatcgacggcgaaggatttggccaagcatttcggctcgctcgatccgatc
atggcggcgtccgtggaagagttgctcgaagtcaatgatgtcggtccgatcgttgctgag
gccattcacaacttcttcggcgaagcacacaaccagcatgtgatcgagcagttgcgtgcg
aaggtgtcatggccggaaggaccgcccgcgcccaaggcgccgcagggcgtgctggcgggc
aagaccgtcgtgctgacgggcacgctgcccacactgtcgcgcgagcaggcgaaggaaatg
ctggaggcggccggcgccaaggtggccggctcggtatcgaagaagaccgactacgtcgtg
gcgggcgccgatgcgggcagcaagctcgcgaaggccgaggaactcggggttccggttctc
gacgaagacggcatgcacaagcttttggaaggagtcactccatga
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