Chlamydia abortus AB7: AB7_6571
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Entry
AB7_6571 CDS
T03773
Symbol
ligA
Name
(GenBank) putative DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cabo
Chlamydia abortus AB7
Pathway
cabo03030
DNA replication
cabo03410
Base excision repair
cabo03420
Nucleotide excision repair
cabo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cabo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AB7_6571 (ligA)
03410 Base excision repair
AB7_6571 (ligA)
03420 Nucleotide excision repair
AB7_6571 (ligA)
03430 Mismatch repair
AB7_6571 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cabo03032
]
AB7_6571 (ligA)
03400 DNA repair and recombination proteins [BR:
cabo03400
]
AB7_6571 (ligA)
Enzymes [BR:
cabo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AB7_6571 (ligA)
DNA replication proteins [BR:
cabo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AB7_6571 (ligA)
DNA repair and recombination proteins [BR:
cabo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AB7_6571 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AB7_6571 (ligA)
MMR (mismatch excision repair)
DNA ligase
AB7_6571 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AB7_6571 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
HHH
DNA_ligase_ZBD
PTCB-BRCT
HHH_3
Nlig-Ia
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
CED80642
LinkDB
All DBs
Position
1:complement(674972..676954)
Genome browser
AA seq
660 aa
AA seq
DB search
MQSTYSREQYISLCKDIEEDDYRYYVLHNPTISDYDYDMKMRQLLSIEAQHPEWKVLWSP
SMRLGDRTSGSFPIVAHAHPMLSIANAYTLEELYEFFSRIEKTLGYTPKYTLEIKIDGIA
VAIRYEQRVLVQALSRGNGRKGEDITANIRTIRSLPLRLSKEAPEFLEVRGEVFFSRATF
CQINAAQRQAEKPEFANPRNAAGGTLKLLSAKEAAQRNLEISIYGSLAEENKRSHYENLL
LCKEWGFPVFGQPRQCQTIEKVVASLHEIEVARAQLPMEIDGVVIKVDDIEDQKVLGMTA
KHYRWALAYKYAPERAETILEDIIVQVGRTGVLTPVAKLRPVVLSGSRVSRASLYNEDEI
ERKDIRIGDTVYVEKGGEIIPQVVGVCLEKRPEGTQPWVMPEYCPVCHQKVTRESDKVSV
RCTNSLCSAGVIEKIRFFCGRDALDIDHLGEKVVTKLFDLGCIHRRCDIFQITEEDLRQV
PGFKDKSIRNVLKSIEKAKSVPLDRFITALGIPYVGIGGANALAQHFLSLESVMAASLDD
LKAIEGIGDKVAESIVAYFHQPEHLEEIQKMLSLGVHILPCHRASSSCLGKAFVITGTLE
KLTRSEAETYIRNCGGKVGSSVSKNTDYLVVGQDPGSKLKRAQELGVPILSEDELLKLLY
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagtacatattccagagaacagtatatctctctgtgtaaagatatcgaagaagat
gattatcgctattatgttcttcataatcccacaatctcagattatgactatgatatgaaa
atgcggcagcttctttctatagaagctcagcatcccgaatggaaagtcttatggtctcct
tctatgcgtctcggagatcgcacttcagggagcttccctattgtcgctcatgcgcaccct
atgctgtctatcgctaatgcctatactttagaagagctttacgagttcttttcccgtata
gagaaaacgttagggtatactcctaaatataccctagaaatcaaaatcgatggtattgcc
gtagctattcgttatgagcagagagttcttgtacaggctttaagccgtgggaatggacgt
aagggagaggatatcacagccaatatccgtacgatacgctcgcttcccctacgtttatcc
aaagaggctccagaattccttgaagttcgaggtgaggtgtttttttcacgagctactttt
tgccagataaatgctgcacaaagacaagctgagaaacctgaatttgcgaatccaagaaat
gctgcgggtggcactttgaaattgttatccgctaaggaagcagcacaaagaaatttagaa
atttctatttacggatcgttagcagaagaaaataagcgatcgcattatgagaatctcctg
ctgtgtaaggagtggggattccctgtatttggtcagccccgccagtgccaaactatagag
aaagtcgtcgcctctctccacgagatagaagtagcgcgagcgcaactccccatggaaatc
gatggtgtggtgatcaaagtagatgatatagaagatcaaaaagtcttaggaatgacagcg
aagcattatcgctgggcactggcgtacaagtatgcgccagaacgggctgaaactatttta
gaagacatcatagttcaggtaggcagaacgggggtgttgaccccagtggctaaactacga
ccggtagtgttgtcaggatctagggtttctagggcttctctatataatgaagatgaaatt
gagagaaaagatatccgtataggtgacactgtctatgtcgagaaggggggagaaattatt
cctcaagttgttggtgtttgcctagaaaagcgtccagaaggcacccagccttgggtgatg
cccgaatattgtcctgtttgtcatcagaaggtcactcgcgaatccgataaagtttctgtc
cgttgtacgaactccttgtgttctgcaggagttattgaaaaaatccgctttttttgtgga
agagatgctttagatattgatcatctcggtgaaaaagttgtgacaaagttatttgattta
gggtgcattcatcgacgctgtgatatttttcaaatcactgaagaagatctccgccaggtt
ccaggatttaaagataagtccataagaaacgttcttaaaagtatagagaaagccaaaagt
gtacctttagatcgttttattacggctcttggtattccttatgtgggtataggcggagcc
aacgctcttgctcaacattttctttctttagaatctgtgatggcggcctctttagatgat
ctgaaagctatagagggcatcggagataaggtggcagagtcgatagttgcgtattttcat
caaccagaacatctcgaagagattcaaaaaatgctttctctaggggtgcatattttacct
tgccatagggcaagctcttcttgtttagggaaagccttcgtgatcacgggaaccctggaa
aaattgactaggtccgaagcagaaacttacattcgcaattgtggcggtaaggtgggttcg
tccgtgtctaaaaacactgactatcttgttgtgggccaagatcccggatccaagttaaaa
agagctcaagaactgggagtccccattcttagtgaggatgagttgttaaaacttctttac
taa
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