Caldithrix abyssi: Cabys_2710
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Entry
Cabys_2710 CDS
T04549
Symbol
ligA
Name
(GenBank) ligA DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
caby
Caldithrix abyssi
Pathway
caby03030
DNA replication
caby03410
Base excision repair
caby03420
Nucleotide excision repair
caby03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
caby00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Cabys_2710 (ligA)
03410 Base excision repair
Cabys_2710 (ligA)
03420 Nucleotide excision repair
Cabys_2710 (ligA)
03430 Mismatch repair
Cabys_2710 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
caby03032
]
Cabys_2710 (ligA)
03400 DNA repair and recombination proteins [BR:
caby03400
]
Cabys_2710 (ligA)
Enzymes [BR:
caby01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Cabys_2710 (ligA)
DNA replication proteins [BR:
caby03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Cabys_2710 (ligA)
DNA repair and recombination proteins [BR:
caby03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Cabys_2710 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cabys_2710 (ligA)
MMR (mismatch excision repair)
DNA ligase
Cabys_2710 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Cabys_2710 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
HHH_8
HHH_3
zf-NADH-PPase
HMBD
UPF0758_N
ADK_lid
zf-tcix
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
APF19458
UniProt:
H1XPH6
LinkDB
All DBs
Position
3222816..3224822
Genome browser
AA seq
668 aa
AA seq
DB search
MDVKKRIQQLRELINKYDYEYYVLAQPSISDYEYDQLMKELEALEKAHPELITPDSPTQR
VSGQPVKEFPTVPHRKPMLSLANTYSEMEFRDFDQRVRQALPGERVEYVCELKIDGVAIS
LHYRDGRFERGITRGDGVQGDDITANLRTIRSIPLVVRRTEKVPEFFEVRGEIYMSKEAF
NKLNKEREAQGEALFANPRNAAAGSLKLQDARLVAQRGLHLFAYYIDSDTAGFVKDTHFE
NLKLLQTLGFPVNPHFRLCKTLAEVFDFVKEWEAKRESLPYEIDGVVVKVNSLEQQERLG
ATAKSPRWAIAFKFKAQQAETLLEKITWQVGRTGIVTPVAELKPVQLAGTTVSRATLHNV
DEIRRKDIRERDWVFIEKGGDIIPKVVGVNLKKRPKDSKPPAIPEKCPVCGTKLVQLEGE
VAIRCPNISCPAQIKRSIEHFASRGAMDIEGLGTALVETLVDKGLIKDIADIYRLKKEDV
AGLERMGEKSAQNLMEAIEKSKQQPLNRLIFALGIPYIGATAAALLARHFKSLDALQNAT
REELEQIDGIGEKMAESIVRYFSNEQNRRILDRLKEAGVKTEIDEEATESESQLLQGKTF
VLTGALPHLKREEARALIEKHGGKVSSSVSRKTSYVLAGQDPGSKLKKAKELGIEIIDEE
TFLKMLNS
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
gtggacgtaaaaaaacgaattcagcaattacgggagttaatcaataaatacgattacgag
tactatgttttagcccagccttccattagcgattacgaatacgatcagttaatgaaagaa
ttagaagcgctggaaaaagcgcatccggagttgattacgcccgattctcccacgcagcgc
gtcagcggccagccggttaaagagttccccaccgttccgcatcgcaaacccatgctttcg
ctggccaatacctacagtgaaatggagttccgcgattttgaccagcgcgttcggcaggcc
ctgcccggcgaacgggtggagtatgtgtgcgaattgaaaatcgacggtgtggccatcagc
ctgcactaccgcgacggccgtttcgaaaggggcattacgcgcggcgacggggttcagggc
gacgacatcaccgccaatttacgcaccattcgttccattccgctggtcgtacgccgcact
gaaaaagtgccggagtttttcgaagtgcgcggcgaaatttacatgtctaaagaggctttt
aacaagctgaacaaagagcgcgaggcgcagggcgaagcgctttttgccaatccgcgcaac
gccgcggcaggctccttaaaattgcaggatgcgcgccttgttgcgcaacgcgggcttcac
ctttttgcttactacatcgattcagacacggccggctttgttaaagacacgcattttgaa
aacctgaaactgcttcaaactctgggttttccggttaatccacactttcgtctttgtaaa
acactggcagaagtgttcgattttgtcaaagagtgggaagccaaaagagagagtttgccg
tacgaaatcgacggcgttgtggtaaaggtaaacagcctggagcagcaggagcggctgggc
gccacggctaaaagtccgcgctgggccattgcctttaaatttaaggcgcaacaggccgaa
accctgctggaaaagatcacctggcaggtggggcgcacgggaatcgttacgccggtggcc
gaattaaaaccggtgcagctggccggaaccaccgtttcgcgcgccactctgcacaatgtg
gacgaaatcaggcgtaaggacatccgcgaaagagactgggttttcattgaaaaaggcgga
gatatcattcctaaagtggttggcgtcaatctaaaaaaacgaccgaaagattcaaaacca
ccggccattcctgaaaaatgtccggtctgcggaacgaaactggtgcaactggaaggcgaa
gtggccatccgctgccccaacatctcctgcccggcgcaaattaaacgcagcatcgaacac
tttgccagtcgcggcgccatggacatcgaggggctgggaaccgccctggtagaaaccctg
gtggacaaggggctaatcaaggacattgccgatatctaccgccttaaaaaagaggacgtg
gccgggctggaacgcatgggcgaaaaaagcgcacaaaacttgatggaagccatcgaaaag
agcaagcagcaaccgctgaaccgcctcatttttgcgctcggcatcccttacattggcgcc
acggccgccgcccttttagccagacatttcaaatcgttggacgccttacaaaatgccaca
agagaagagctggaacagattgacggaatcggcgaaaagatggccgaaagcattgtgcgc
tactttagcaacgaacagaatcgccgtattcttgatcgcctgaaagaagccggcgttaaa
acagaaatcgacgaggaagctacagaaagcgagtcgcagcttttacagggtaaaacgttt
gtactgaccggcgctctgccccatcttaaacgggaagaagccagagcgctgatcgaaaag
cacggcggcaaggtaagctcctcggtttccagaaagaccagctacgtgctggccggtcag
gatcccggatctaaactgaaaaaagctaaagagctgggtattgagatcatcgacgaagaa
acttttttaaagatgcttaattcctga
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