Clostridium acetobutylicum ATCC 824: CA_C1195
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Entry
CA_C1195 CDS
T00056
Symbol
ligA
Name
(GenBank) DNA ligase (NAD dependent), LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cac
Clostridium acetobutylicum ATCC 824
Pathway
cac03030
DNA replication
cac03410
Base excision repair
cac03420
Nucleotide excision repair
cac03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CA_C1195 (ligA)
03410 Base excision repair
CA_C1195 (ligA)
03420 Nucleotide excision repair
CA_C1195 (ligA)
03430 Mismatch repair
CA_C1195 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cac03032
]
CA_C1195 (ligA)
03400 DNA repair and recombination proteins [BR:
cac03400
]
CA_C1195 (ligA)
Enzymes [BR:
cac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CA_C1195 (ligA)
DNA replication proteins [BR:
cac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CA_C1195 (ligA)
DNA repair and recombination proteins [BR:
cac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CA_C1195 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CA_C1195 (ligA)
MMR (mismatch excision repair)
DNA ligase
CA_C1195 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CA_C1195 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
5_3_exonuc
Nlig-Ia
HHH
RNA_lig_T4_1
BRCT_2
DNA_ligase_ZBD
RNA_ligase
POLH-Rev1_HhH
Zn_ribbon_3
RNA_pol_A_CTD
DUF7501
Motif
Other DBs
NCBI-ProteinID:
AAK79167
UniProt:
Q97JS8
LinkDB
All DBs
Position
1343492..1345483
Genome browser
AA seq
663 aa
AA seq
DB search
MKLIEDLIEKLNKYSYSYYVLDNPIVADKEYDIMYDELKRLEEETEYINPNSPTQRVGDI
ILDKFEKTHHKNKLWSLDKAQKKDEVKAFVNKCVKFVEQYNLTHSEKLPSPQFVVTQKLD
GLTINCSYNESRLIKSATRGTGEIGEDITEQSKTILNLPNAINYSGEIDVHGEALMTKNA
LEQYNSNLKVNETPLKNLRNGAAGALRNLNIKETARRKLVAQFYDLSYTDKKLKKYSEIL
LFLKSQGFNITEYNICNNFDEINQAIDNIGEVRSSLQYDIDGVVIRLNDIETSRLMGYTI
KCPKYAIAYKFKAKETTTKLIDVEWNVGRSGRINPTAILEPVELAGVIVKRATLNNMDDI
KRKKIKKGARVFLRRSNDVIPEIMGVTEETEGETKEIEAPTICPYCGSEIVKEGVHLFCE
NTLSCKPQMVKSIVHFASRKAMNIEGFSEKTAEQLFEKLNIKSISDLYRITKEELMSLDK
FKDKKASNLINAIEKSKECDLDSFVYSLGIPNVGKKTATDLCKQFKSFENIKKASYFELI
LVQDIGSIVAKSIVDFFKQEKIEKSLNELFKLGVKPSYEESEVSESVFNDKTVVATGSLQ
NYSRTEIKEKLESLGAKVAGSVSKKTDYVIAGENAGSKYDKAVALGVKILTEEKFEELIE
SVK
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgaaactaattgaagatttaattgaaaagttaaataaatattcctacagctattatgtg
cttgataatccaattgtagctgataaggaatatgatataatgtatgatgagcttaaaaga
ttagaagaagaaacagagtatattaatcctaatagtccaactcaaagggttggtgatatt
atccttgataaatttgagaaaacacatcataaaaataaactttggagtcttgataaggct
caaaagaaggatgaagttaaagcttttgtaaataagtgtgttaaatttgtagagcaatat
aatttaacacatagtgaaaaattgccttcaccacaattcgttgtaacacaaaagcttgat
ggacttactataaattgttcatacaatgaaagtagattaattaaatctgcaactaggggg
acaggggaaataggagaagatattacagaacaaagtaaaaccattctcaatcttcctaat
gctataaattatagtggagaaattgatgttcatggagaagcattaatgacaaaaaatgct
ttagaacaatataatagtaatttaaaagtaaatgaaacaccacttaaaaacttaaggaat
ggtgcagcaggagcattgagaaatttaaacataaaagaaactgcaagaagaaagctagta
gctcaattttatgatcttagctatacagataagaagttaaaaaaatatagtgaaatttta
ttatttttaaaatctcaaggatttaacataactgagtacaatatttgtaataattttgat
gaaattaaccaagctattgataatataggagaggtaagaagtagcttacaatacgatata
gatggagttgtaattcgattaaatgatatagaaacgagtagattaatgggctatacaata
aagtgtcctaaatatgcaatagcttataaatttaaagcaaaagaaacaactacaaagcta
atagatgtagaatggaacgtgggcagaagtggaagaatcaatccaacagctattttagaa
cctgtagaattagctggagtaatagttaaaagagctacattaaataatatggatgatata
aagaggaaaaagattaaaaaaggtgctagagtatttctaagaagatctaatgatgtaata
ccagagattatgggagttacagaagagacagagggagaaacgaaggaaatagaagcacca
acaatatgcccatattgcggcagtgaaatagtaaaagaaggtgtacatttattttgtgaa
aatactttgtcctgtaaaccccaaatggtaaaaagtatagtccattttgctagcagaaaa
gctatgaatatagaaggctttagtgagaaaacagcagaacaattatttgagaaattaaac
ataaaaagcatatctgacttatatagaataactaaagaagaattaatgtcattggataag
tttaaagacaaaaaggctagtaatcttataaatgctatagagaaaagtaaggaatgtgat
cttgattcatttgtatactcattgggtataccaaatgtaggaaaaaaaacagcaacagat
ttatgtaagcaatttaaaagctttgagaacataaaaaaagcttcttattttgagcttatc
ttggttcaagatataggatcaattgttgcaaaaagtattgttgatttttttaaacaagaa
aaaatagaaaaaagtctaaatgaattatttaaacttggagtaaaaccatcttatgaagaa
agtgaagtttcagaaagtgtatttaatgataaaactgtagttgcaacaggaagtcttcaa
aattatagcagaacagaaataaaagaaaagttggagagccttggtgctaaggttgctgga
agtgttagtaaaaaaactgattatgtaatagcaggtgaaaatgcaggatctaaatatgac
aaagctgtagcacttggagttaaaatattaactgaagaaaagtttgaagaattaatagaa
agtgtaaagtag
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