Corynebacterium accolens: CACC_05445
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Entry
CACC_05445 CDS
T08449
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cacc
Corynebacterium accolens
Pathway
cacc03030
DNA replication
cacc03410
Base excision repair
cacc03420
Nucleotide excision repair
cacc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cacc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CACC_05445 (ligA)
03410 Base excision repair
CACC_05445 (ligA)
03420 Nucleotide excision repair
CACC_05445 (ligA)
03430 Mismatch repair
CACC_05445 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cacc03032
]
CACC_05445 (ligA)
03400 DNA repair and recombination proteins [BR:
cacc03400
]
CACC_05445 (ligA)
Enzymes [BR:
cacc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CACC_05445 (ligA)
DNA replication proteins [BR:
cacc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CACC_05445 (ligA)
DNA repair and recombination proteins [BR:
cacc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CACC_05445 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CACC_05445 (ligA)
MMR (mismatch excision repair)
DNA ligase
CACC_05445 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CACC_05445 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
UQZ27797
LinkDB
All DBs
Position
1092332..1094392
Genome browser
AA seq
686 aa
AA seq
DB search
MTNPADVQREWNDLAQEVRRHRNLYYNGEPAIPDADFDALFQRLMDLEKQHPELAVPDSP
TQQVGATPNAGEDIEHLERMMSLDNVFSAGEMQDWLDRTPAKTYLTELKIDGLSIDLVYR
NGRLDTAATRGDGTVGEEITPNARVISDIPHELTGTDEYPVPELIEIRGEVYMRPEDFEE
INEERAADGKARFANPRNAAAGGLRMKDPAEVKKRRLRMVCHGLGAREGFSPSSQHDAYK
AIAAWGLPVSPYTRQVHSAAEVQEEVSYWAEHRHDAIFEMDGLVVKVDDLGSQRQLGATS
RAPRWAIAYKYPPEEVTTKLKNIEVGVGRTGRVTPFAIMEPVFVSGSTVSMATLHNQSEV
KRKGVLIGDTIIIRKAGEIIPEVLGPVREQRDGSEYEWSFPTQCPACGTTLAPQKDGDAD
WRCPNTQSCPAQLSARLEYLASRKGLDIEALGEKGAMDLIENGILTDESELFELTEEKLL
ASDVYTAKRDTKDKRSKKEGNVKVNTAGKNLLQNLEEVKDRDFWRVLVSLSIRHVGPIAA
RALAARYGSMEKLRAAKTEDLAEVDGVGAVIAESFHAWFEVDWHRTIVEKWAEAGLAMEV
AAEDRKEQTLEGLTIVVTGSLEDFTRDSAKEAIISRGGKATGSVSKKTSYLVAGANAGSK
EDKARDLGVPILNEEQFHTLLNTGEV
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
gtgactaatccagctgatgtgcaacgtgaatggaacgacctggcgcaggaagtgcgccgc
caccgcaacctgtattacaacggtgaaccggcaattcccgatgccgactttgatgcgctt
ttccagcgcctgatggacctagaaaagcagcacccggagctggcggttccggattcgccc
acccagcaagtaggtgcaacgccgaacgctggcgaggatatcgagcacctcgagcgcatg
atgagcctagacaatgtctttagcgccggtgagatgcaggactggctggataggacgccc
gccaagacttacctgacggagctgaagatcgatggcctctccatcgacttggtctaccgc
aacgggcgcttagataccgctgctacccgtggcgatggcaccgtgggcgaggaaattacc
cccaatgcgcgggttatttctgatatcccgcacgaacttacaggcaccgatgagtaccca
gtcccggaactcattgaaatccgcggcgaggtctatatgcgccccgaggacttcgaagaa
atcaatgaggagcgcgcggcagacggcaaggcgcggtttgccaatccccgcaacgctgcg
gccggcggactgcgcatgaaggatcccgccgaggtgaaaaaacgccgcctgcgtatggtg
tgtcacggcctaggcgcgcgcgagggattttccccctcctcccagcacgacgcctataag
gccatcgccgcatggggcttgcccgtctcgccctataccaggcaggtccactccgccgca
gaagtacaagaggaagtatcttactgggccgaacaccgccacgatgcgattttcgaaatg
gatgggctcgtggtcaaggtggacgacttgggctcacagcgccagctcggggcgacctcc
cgcgcaccgcgctgggccattgcctataagtacccgccggaagaggtaacaacaaagctg
aagaacatcgaggtcggcgtggggcgtacggggcgcgttaccccctttgccatcatggaa
ccggtctttgtctccggctccacggtatccatggccaccctgcacaaccagtctgaggtc
aagcgcaagggcgtgcttatcggggataccattattatccgcaaggccggggaaatcatt
cctgaggtactaggccccgtgcgcgaacagcgcgatggcagcgaatacgaatggtccttc
cccacgcagtgcccagcctgcgggacgacactcgctccgcaaaaggacggcgatgctgac
tggcgatgccccaatacccaatcctgcccagcccagctttccgcgcgcctggaatacctc
gcctcccgcaagggcctcgatatcgaggcactgggggagaagggggccatggatctcatc
gaaaacggtatcctcaccgatgaatccgagctttttgagctaacggaagaaaagctgctt
gcttccgatgtctatacagccaaacgcgatacgaaggataagcgcagcaaaaaagagggc
aacgtcaaggtcaataccgcgggcaagaacctgctgcagaacttagaagaggtcaaagac
cgcgacttctggcgcgtgctggtctcgctatccattcgccacgtgggtcccattgccgcc
cgcgccttggcagcgcgttacggctccatggagaagctgcgtgccgctaagaccgaggat
cttgcagaggtagacggcgtgggcgcggtcatcgctgagtccttccatgcctggttcgag
gtggactggcaccgcaccatcgttgagaaatgggcggaggctggcctcgctatggaggta
gccgccgaggacaggaaagaacagaccctagagggcctgaccatcgttgtcaccggcagc
ctcgaagacttcacgcgcgattccgccaaggaagccatcattagccgcggcggaaaggca
accgggtccgtatcgaagaaaacctcctacctcgtcgctggggccaatgccggctccaag
gaggacaaggcccgcgaccttggcgtgcctatcttgaatgaggagcaattccacacgctc
ttaaacactggggaggtgtag
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