Candidatus Cloacimonas acidaminovorans: CLOAM0968
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Entry
CLOAM0968 CDS
T04769
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
caci
Candidatus Cloacimonas acidaminovorans
Pathway
caci03030
DNA replication
caci03410
Base excision repair
caci03420
Nucleotide excision repair
caci03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
caci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CLOAM0968 (ligA)
03410 Base excision repair
CLOAM0968 (ligA)
03420 Nucleotide excision repair
CLOAM0968 (ligA)
03430 Mismatch repair
CLOAM0968 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
caci03032
]
CLOAM0968 (ligA)
03400 DNA repair and recombination proteins [BR:
caci03400
]
CLOAM0968 (ligA)
Enzymes [BR:
caci01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CLOAM0968 (ligA)
DNA replication proteins [BR:
caci03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CLOAM0968 (ligA)
DNA repair and recombination proteins [BR:
caci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CLOAM0968 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CLOAM0968 (ligA)
MMR (mismatch excision repair)
DNA ligase
CLOAM0968 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CLOAM0968 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
PTCB-BRCT
HHH
Auto_anti-p27
RNA_lig_T4_1
RUBY_RBDX
DZR_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
CAO80840
UniProt:
B0VHM5
LinkDB
All DBs
Position
complement(1125001..1127004)
Genome browser
AA seq
667 aa
AA seq
DB search
MNKNELKARIDRLRAEIEHHNRLYYTLAKPEISDYEYDMLVKELQELEAQYAEGAVEESP
TQKVGSDLTPGAKTIPHKVRMASLENAYSLEEVLAFINRTNNDLGYASEYCAELKIDGFS
INLYYENGNFIYATTRGDGLEGEDVTENFRLLPDVPFTIDYKGAIEIRGEIYIPVQDFLA
LNEFRRENELKTFANPRNAAAGSIKLKSREEVKSRHLKALFYALGYYETPLQYKNEIIDK
QTRLLDFLDELGFPTSKRTLCKHYQEAEKFCLQMEQERYTIPYDIDGIVIKVNSLEDQKK
LGWTAKSPKWAIAYKFKPEEKETVLESVSFQVGRTGAVTPVANLKPVFISGSTVSHATLH
NADEIKRLDLHYGDTVLVVKSGEIIPKILSVNVSKRPVNAKPVIFPATCPVCNAPLQRDE
DGSINYCPNANCPAQIQRKLEHFASREAMDIYGLGSSLIARLIETGQIKWIPDIYHLDYN
KIAEMERMGKKSADNLQKAIEASKTKNFDRVLFALGIRHIGSITARTLAQHFKNIDALIM
AKEEELLSVPDIGSIIARSIIGFFSQKSNRELIDSLRKVGLQFTYISPQSSAILAGKTFL
ITGTLPNYSRKDMETLITEHGGKILSGVSKQLNYLIVGENPGSKLDKAHQLGTVKIISEA
ELLDMLQ
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaaatgaattaaaagccagaattgaccgcttaagagctgaaatagaacatcat
aatcggctctattatactcttgccaaacccgaaatcagtgattatgaatatgatatgctg
gtgaaggaattacaggaattggaagcacaatatgcagaaggtgcagttgaagaatcaccc
actcaaaaagttggaagcgaccttactccaggggctaaaaccattcctcataaagtgcgg
atggcaagtttggaaaatgcttattctttggaagaggttttggcttttatcaatcggaca
aataatgatttgggttatgccagtgaatactgtgcggaattgaaaatagacggatttagc
atcaacctttattatgaaaacggaaattttatttatgctacaacccggggcgatggtttg
gaaggtgaagatgtaacagaaaattttcgtttgctcccggatgttccttttaccattgat
tataaaggagccatagaaattagaggcgaaatatatatacccgtgcaggattttctggcg
ctgaatgaattccgcagagaaaatgaattgaagacctttgctaatccgcgtaacgcagct
gccggctcaattaagctgaaaagtagagaggaagtgaagtcccgtcatttgaaggcattg
ttttatgctttgggctactatgagacccccctgcagtataaaaatgaaattatagataag
caaacccgattattggactttttggatgaacttggcttcccaacaagtaaaagaacttta
tgcaagcactatcaggaagcggaaaaattctgcctgcaaatggaacaggaacgttatact
attccctatgatattgatggcattgtgattaaggttaatagtttggaagatcagaaaaaa
ttgggctggacggctaaaagtcccaaatgggcaattgcctataaatttaagccggaagaa
aaagaaaccgttctggaatcggttagttttcaggttggtagaaccggtgcagttactcct
gtagctaatctaaagccggtttttatttccggaagcaccgtttctcacgctactttgcat
aatgccgatgaaataaaacggttggatttgcattatggcgatactgttttagtggttaaa
agcggagaaattatccctaaaatcctttccgtaaatgtcagtaaacgccctgtaaatgcc
aaaccggttatttttcctgcaacctgtcctgtttgtaatgcacctttacaacgcgacgaa
gatggcagtataaactactgtcctaatgccaattgccccgctcagatacagcgtaaactg
gaacattttgcttcgcgtgaagcaatggatatttatggcttaggcagttcactaatagcg
cgtttgatagaaacaggtcagattaaatggatacctgatatctatcatcttgattataat
aaaattgcagaaatggaaagaatgggaaaaaaatctgccgataatttacaaaaagccatt
gaagcatctaaaaccaaaaattttgacagagttcttttcgctctcggaataagacatatc
ggctctattactgcccgcactctggctcaacactttaaaaatattgatgctcttattatg
gcaaaggaagaagaacttttaagcgttcccgatattggttccattattgcccggtccatt
atcggtttcttctcccaaaaaagcaatcgggaattgattgactctttgagaaaagtcgga
ttacaattcacttacataagcccgcaaagttctgctatcttagctggaaagaccttttta
ataacgggaactctgcccaactatagtagaaaagatatggaaacactgattacggaacac
ggaggaaaaattttaagtggtgtaagtaaacagctgaattaccttatagtaggtgaaaat
cccggctccaaactggataaggcacaccaactgggaacggttaaaattatcagtgaagcg
gaacttttggatatgctgcaatga
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