Cognatishimia activa: HZ995_15220
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Entry
HZ995_15220 CDS
T07138
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cact
Cognatishimia activa
Pathway
cact03030
DNA replication
cact03410
Base excision repair
cact03420
Nucleotide excision repair
cact03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cact00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HZ995_15220 (ligA)
03410 Base excision repair
HZ995_15220 (ligA)
03420 Nucleotide excision repair
HZ995_15220 (ligA)
03430 Mismatch repair
HZ995_15220 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cact03032
]
HZ995_15220 (ligA)
03400 DNA repair and recombination proteins [BR:
cact03400
]
HZ995_15220 (ligA)
Enzymes [BR:
cact01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HZ995_15220 (ligA)
DNA replication proteins [BR:
cact03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HZ995_15220 (ligA)
DNA repair and recombination proteins [BR:
cact03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HZ995_15220 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HZ995_15220 (ligA)
MMR (mismatch excision repair)
DNA ligase
HZ995_15220 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HZ995_15220 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Bep_C_terminal
E1_dh
TetR_C_30
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QTN35796
UniProt:
A0A975ERE4
LinkDB
All DBs
Position
complement(3076206..3078332)
Genome browser
AA seq
708 aa
AA seq
DB search
MQPEKDISTLSASEAREELARLAKVLAQANTDYHTLDAPELSDAEYDRLKRRNAAIERAF
PDLKRSDSPSEQVGAAVASGFSKVEHVVRMLSLGNAFTDEDVQDFDGRIRNFLGLAADAP
LKFTAEPKIDGLSLSLRYEGGQLVQAATRGDGATGENVTANALTMSDIPQQLTDAPDVLE
VRGEVYMAHSDFEALNAAQEAKGDKPFANPRNAAAGSLRQLDSEVTKSRPLRFFAYAWGD
LSAPLASTQMGAIKRLAELGFVTNDLTKLCDGPAEMIAHYKDIEAQRASLGYDIDGVVYK
VDELALQDRLGFRSTTPRWAIAHKFPAELAWTTLETIDIQVGRTGALSPVARLKPVTVGG
VVVSNATLHNEDYIRGLDSKGAEIRGGKDIREGDWVQVYRAGDVIPKVADVDLSKRPADA
TPYVFPTLCPECGSEAVREEGDAVRRCTGGMICPAQAIEKLKHFVSRKAFDIEGLGAKQI
EMFFDDPDLPVRTPADIFRLEGRDAGNLTKLKNRKGWGDQSAANLFAAINEKRNIGFGRA
LFALGIRHVGEAASNLIANHYGDWQSFEAAVTAAAQFEGPEWEDLLAMDGIGEVMARSLV
TAFAQDKERAVIDELVAQLSIQSAEKPKAEGSPVAGKTVVFTGKLEKMTRDEAKARAERL
GAKVAGSVSKKTDLLVAGPGAGSKAKKAADLGVDTIDEDAWLALVEGL
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
gtgcagccagaaaaagacatctcgacactttccgcatccgaggcacgggaagagcttgcc
cgcttggccaaagtcctagcgcaggcaaacacggactatcacacgcttgatgcaccagag
ctgtcggacgccgaatacgaccggctcaagcggcgaaacgcggcaatcgagcgcgcgttc
ccggatctgaaacgcagtgatagccccagcgagcaggttggggctgcggtggcttccggg
ttttccaaggtcgagcatgttgtgcgcatgttgtcgttgggcaatgctttcacagacgaa
gacgtgcaggattttgacgggcggatccgaaattttctgggactggcggcggatgcgcct
ctgaagttcacggccgaacccaaaatcgacgggcttagcctgtctttgcgctatgaaggc
ggtcagcttgtccaagctgcaacccgtggtgacggggcgacgggcgaaaatgtgacggcc
aatgcgctgacgatgtcggatatcccgcagcagctgacagatgctccggatgtgttggaa
gtgcgcggcgaagtttacatggcgcatagcgatttcgaagcgctcaatgccgcgcaagag
gccaaaggcgacaaacctttcgccaatccgcgcaatgcggcggctggatctttgcggcaa
ttggattccgaggtcaccaaatctcgtccgttgcggttttttgcctatgcttggggggat
ctctcggcacctttggcaagcacgcagatgggagcgatcaaacggctggcagaattgggg
tttgtgaccaatgatctgaccaaattatgtgacggtcccgccgagatgattgcccactac
aaagacatcgaagcgcagcgcgcgtcactgggctatgacatcgatggggttgtctacaag
gtggatgagcttgccttgcaggaccgactcgggttccgttcgaccacgccgcgttgggcg
attgcgcataaattccctgcagaacttgcctggaccacgcttgagacaatcgacattcag
gtcggacgcacgggcgcgctgtctccggtggcgcggctgaagccggtgactgtagggggc
gtcgtcgtctcgaatgcgacgttgcacaatgaggactatatccggggtctggatagcaag
ggcgccgagatccggggcggtaaagacattcgcgaaggtgattgggttcaggtctatcgc
gcgggggatgtcattccgaaagtggcagatgtggacctgtccaagcggcctgctgatgca
acgccctatgtctttcccactctttgccctgaatgcggttcagaggccgtgcgtgaagaa
ggtgatgccgtaaggcgatgcacaggcggcatgatttgcccggctcaagcgattgagaaa
ctgaaacattttgtgtctcgtaaggcgttcgatatcgaggggcttggcgcgaagcaaatc
gagatgttctttgatgatcctgatctgcctgtgcggacacctgcggatattttcaggctg
gaaggccgagacgctggcaatttgaccaagctcaagaaccgcaaaggctggggggatcaa
agcgcggccaatctctttgccgccatcaacgaaaaacgcaatatcggctttggccgcgcg
ctgtttgctttgggaatccggcacgtcggagaggcggcgtctaacttgatcgccaatcac
tacggcgactggcagagttttgaggccgctgtcacggctgccgctcagtttgagggtccc
gaatgggaagacctcttggcgatggacggcatcggagaggtcatggcgcggtctttggtc
acggctttcgcacaagacaaagagcgcgcggtgattgacgaactcgttgcgcaattgtcg
atccagtccgccgagaaaccaaaagcagagggcagccccgtcgcgggcaaaacagtcgtc
tttaccggcaagttggaaaagatgacgcgggacgaagccaaggcgcgggcagagcggttg
ggcgcgaaggtcgcgggttctgtgtcgaagaaaacagacttattggtggccggtccaggc
gctggatccaaagcgaagaaagccgctgatttgggcgtggacaccatcgacgaagatgcc
tggcttgcgctggtcgaaggtctgtga
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