Gottschalkia acidurici: Curi_c03120
Help
Entry
Curi_c03120 CDS
T02255
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cad
Gottschalkia acidurici
Pathway
cad03030
DNA replication
cad03410
Base excision repair
cad03420
Nucleotide excision repair
cad03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Curi_c03120 (ligA)
03410 Base excision repair
Curi_c03120 (ligA)
03420 Nucleotide excision repair
Curi_c03120 (ligA)
03430 Mismatch repair
Curi_c03120 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cad03032
]
Curi_c03120 (ligA)
03400 DNA repair and recombination proteins [BR:
cad03400
]
Curi_c03120 (ligA)
Enzymes [BR:
cad01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Curi_c03120 (ligA)
DNA replication proteins [BR:
cad03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Curi_c03120 (ligA)
DNA repair and recombination proteins [BR:
cad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Curi_c03120 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Curi_c03120 (ligA)
MMR (mismatch excision repair)
DNA ligase
Curi_c03120 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Curi_c03120 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
5_3_exonuc
PTCB-BRCT
HHH
HHH_8
Nlig-Ia
BRCT_2
DNA_ligase_ZBD
DUF7501
Motif
Other DBs
NCBI-ProteinID:
AFS77392
UniProt:
K0AXC0
LinkDB
All DBs
Position
336197..338203
Genome browser
AA seq
668 aa
AA seq
DB search
MDTKISRMRELIEILNDLNYQYYTLDNPKVSDKEYDKIYDELVMLEKETATVLSDSPTQR
VGGEVLDKFIKHRHLGSLWSLDKSQSVEELRSWDNRVKKLIDQYNLEYGEQIPYPTYVME
YKFDGLTINLTYENGELIQGATRGNGIEGEAILPQIKTIRNIPLSIPYKDGTIEVQGEGL
MPLSALEKYNEKALEPLKNARNAAAGALRNLDPKVTRERHLISYIYNVGYSDNIRFDSHI
NMMNFLKENKFPVNDYLKAYSSIEEVIKEIEGIKENINKLDVLTDGIVIKINDIRTREIL
GYTQRFPRWAIAYKFEAEEVTTKLLGIDWNVGRTGKVTPTALLEPVDIGGVTVKRATLNN
WDDIQRKKVALGCRVWIRRSNDVIPEIMGAVEDCEKHEEIIKPEHCPYCESELQHEGVHL
FCSNSLSCKPQLVSRLVHFASRDAMNIEGFSEKTANQLFEELELKNISDLYELKYEDLIN
LERFGPKKAQNLLYAIEKSKDCALDSFIYSLGIPNVGKKTATELANNFKSLENVMNAEHE
ELIQIPDIGDIVAESIVEFFHDDKIHESIEKLLSEGLKISHEETEIIREDSIFNGKTVVI
TGTLDGISRTEAGEIVTRLGGKVTGSVSKKTDIVIVGENPGSKAEKAVELGIRIIQNDEL
KQIISEIQ
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggatactaagatatctaggatgagagaattaatcgaaatattaaatgatttaaactac
caatattacacattagataacccaaaagttagtgacaaggaatatgataaaatatatgac
gaattggtcatgttagaaaaggagacagccactgtactttctgattctccaacgcaaaga
gttgggggagaagttttagataaatttatcaagcatagacacttaggcagtctttggagt
ttagataagagtcagagcgtggaagaacttagaagctgggataatagggtaaaaaagctt
atagaccaatataatttggagtatggagagcagataccatatccaacatatgttatggaa
tataagtttgatggacttactataaaccttacatatgaaaatggtgaactaatacaagga
gctactagaggaaatggaatagagggagaggccatacttccccaaataaaaactataaga
aatattccactaagtataccgtataaagatggaaccatagaagttcaaggtgaaggattg
atgcctttatcagcgctagaaaagtataatgaaaaggcacttgagcctttaaaaaatgct
agaaatgcagctgctggagcattaagaaatttagatccaaaagtaacgagagaaagacat
cttatatcttatatttataatgttggctattcagacaatataagatttgatagtcatata
aatatgatgaactttttaaaggaaaataaatttcctgttaatgattatttgaaagcgtat
tctagcatagaagaagttataaaagaaattgaagggataaaggaaaacataaataaacta
gatgtactaactgatgggatagttataaagataaatgatataagaactagagaaatatta
ggatatactcaaagattcccaagatgggcaattgcatataaatttgaggcggaagaagta
actactaaattgctaggaattgattggaacgtaggaagaacagggaaggtaactcctaca
gctcttttagaacctgtggatataggtggagttactgtaaaaagagctacattaaataat
tgggacgatatacaaagaaaaaaggtagctttaggttgtagagtttggataagaagatca
aatgatgttatacctgaaataatgggagcagtagaagattgtgaaaaacatgaagaaata
ataaaaccagaacattgtccttactgtgaaagtgaacttcaacatgaaggagtccatttg
ttttgctcaaattcattatcatgtaagccacaattagtatctagactagtacacttcgct
agtagggacgctatgaatatagaaggatttagtgaaaaaacagctaatcaactatttgaa
gagctagagttgaaaaatatatcggatctttatgaattaaaatatgaagatttaatcaac
ttagaaagatttggacctaaaaaagctcaaaacctattatatgctatagaaaaaagtaaa
gactgtgcattggattcatttatatattcactaggaataccgaatgtaggtaagaaaaca
gctactgaactagctaataattttaagtcattagaaaatgttatgaatgcagaacatgag
gaacttatacaaataccggatataggcgatatagtagcagaaagtatagtagaatttttc
cacgatgataagatacatgaaagtatagagaaactattgtctgagggcttgaagattagc
catgaagagactgaaataataagagaggatagtatatttaatggaaaaacagtagtaata
acaggaacattggatggtattagtaggacagaagcaggtgaaatagtaacaagattagga
ggcaaagtaacaggcagtgtaagtaaaaagacagatatagttatagtaggagaaaatcca
ggatctaaggctgagaaagctgttgagttaggaattagaataattcaaaatgatgagcta
aaacagataataagtgaaattcaatag
DBGET
integrated database retrieval system
