Clostridium acetobutylicum DSM 1731: SMB_G1215
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Entry
SMB_G1215 CDS
T01548
Symbol
ligA1
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cae
Clostridium acetobutylicum DSM 1731
Pathway
cae03030
DNA replication
cae03410
Base excision repair
cae03420
Nucleotide excision repair
cae03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SMB_G1215 (ligA1)
03410 Base excision repair
SMB_G1215 (ligA1)
03420 Nucleotide excision repair
SMB_G1215 (ligA1)
03430 Mismatch repair
SMB_G1215 (ligA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cae03032
]
SMB_G1215 (ligA1)
03400 DNA repair and recombination proteins [BR:
cae03400
]
SMB_G1215 (ligA1)
Enzymes [BR:
cae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SMB_G1215 (ligA1)
DNA replication proteins [BR:
cae03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SMB_G1215 (ligA1)
DNA repair and recombination proteins [BR:
cae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SMB_G1215 (ligA1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SMB_G1215 (ligA1)
MMR (mismatch excision repair)
DNA ligase
SMB_G1215 (ligA1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SMB_G1215 (ligA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
5_3_exonuc
Nlig-Ia
HHH
RNA_lig_T4_1
BRCT_2
DNA_ligase_ZBD
RNA_ligase
POLH-Rev1_HhH
Zn_ribbon_3
RNA_pol_A_CTD
DUF7501
Motif
Other DBs
NCBI-ProteinID:
AEI34040
LinkDB
All DBs
Position
1345095..1347086
Genome browser
AA seq
663 aa
AA seq
DB search
MKLIEDLIEKLNKYSYSYYVLDNPIVADKEYDIMYDELKRLEEETEYINPNSPTQRVGDI
ILDKFEKTHHKNKLWSLDKAQKKDEVKAFVNKCVKFVEQYNLTHSEKLPSPQFVVTQKLD
GLTINCSYNESRLIKSATRGTGEIGEDITEQSKTILNLPNAINYSGEIDVHGEALMTKNA
LEQYNSNLKVNETPLKNLRNGAAGALRNLNIKETARRKLVAQFYDLSYTDKKLKKYSEIL
LFLKSQGFNITEYNICNNFDEINQAIDNIGEVRSSLQYDIDGVVIRLNDIETSRLMGYTI
KCPKYAIAYKFKAKETTTKLIDVEWNVGRSGRINPTAILEPVELAGVIVKRATLNNMDDI
KRKKIKKGARVFLRRSNDVIPEIMGVTEETEGETKEIEAPTICPYCGSEIVKEGVHLFCE
NTLSCKPQMVKSIVHFASRKAMNIEGFSEKTAEQLFEKLNIKSISDLYRITKEELMSLDK
FKDKKASNLINAIEKSKECDLDSFVYSLGIPNVGKKTATDLCKQFKSFENIKKASYFELI
LVQDIGSIVAKSIVDFFKQEKIEKSLNELFKLGVKPSYEESEVSESVFNDKTVVATGSLQ
NYSRTEIKEKLESLGAKVAGSVSKKTDYVIAGENAGSKYDKAVALGVKILTEEKFEELIE
SVK
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgaaactaattgaagatttaattgaaaagttaaataaatattcctacagctattatgtg
cttgataatccaattgtagctgataaggaatatgatataatgtatgatgagcttaaaaga
ttagaagaagaaacagagtatattaatcctaatagtccaactcaaagggttggtgatatt
atccttgataaatttgagaaaacacatcataaaaataaactttggagtcttgataaggct
caaaagaaggatgaagttaaagcttttgtaaataagtgtgttaaatttgtagagcaatat
aatttaacacatagtgaaaaattgccttcaccacaattcgttgtaacacaaaagcttgat
ggacttactataaattgttcatacaatgaaagtagattaattaaatctgcaactaggggg
acaggggaaataggagaagatattacagaacaaagtaaaaccattctcaatcttcctaat
gctataaattatagtggagaaattgatgttcatggagaagcattaatgacaaaaaatgct
ttagaacaatataatagtaatttaaaagtaaatgaaacaccacttaaaaacttaaggaat
ggtgcagcaggagcattgagaaatttaaacataaaagaaactgcaagaagaaagctagta
gctcaattttatgatcttagctatacagataagaagttaaaaaaatatagtgaaatttta
ttatttttaaaatctcaaggatttaacataactgagtacaatatttgtaataattttgat
gaaattaaccaagctattgataatataggagaggtaagaagtagcttacaatacgatata
gatggagttgtaattcgattaaatgatatagaaacgagtagattaatgggctatacaata
aagtgtcctaaatatgcaatagcttataaatttaaagcaaaagaaacaactacaaagcta
atagatgtagaatggaacgtgggcagaagtggaagaatcaatccaacagctattttagaa
cctgtagaattagctggagtaatagttaaaagagctacattaaataatatggatgatata
aagaggaaaaagattaaaaaaggtgctagagtatttctaagaagatctaatgatgtaata
ccagagattatgggagttacagaagagacagagggagaaacgaaggaaatagaagcacca
acaatatgcccatattgcggcagtgaaatagtaaaagaaggtgtacatttattttgtgaa
aatactttgtcctgtaaaccccaaatggtaaaaagtatagtccattttgctagcagaaaa
gctatgaatatagaaggctttagtgagaaaacagcagaacaattatttgagaaattaaac
ataaaaagcatatctgacttatatagaataactaaagaagaattaatgtcattggataag
tttaaagacaaaaaggctagtaatcttataaatgctatagagaaaagtaaggaatgtgat
cttgattcatttgtatactcattgggtataccaaatgtaggaaaaaaaacagcaacagat
ttatgtaagcaatttaaaagctttgagaacataaaaaaagcttcttattttgagcttatc
ttggttcaagatataggatcaattgttgcaaaaagtattgttgatttttttaaacaagaa
aaaatagaaaaaagtctaaatgaattatttaaacttggagtaaaaccatcttatgaagaa
agtgaagtttcagaaagtgtatttaatgataaaactgtagttgcaacaggaagtcttcaa
aattatagcagaacagaaataaaagaaaagttggagagccttggtgctaaggttgctgga
agtgttagtaaaaaaactgattatgtaatagcaggtgaaaatgcaggatctaaatatgac
aaagctgtagcacttggagttaaaatattaactgaagaaaagtttgaagaattaatagaa
agtgtaaagtag
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