Corynebacterium afermentans subsp. lipophilum: CAFEL_00785
Help
Entry
CAFEL_00785 CDS
T09361
Symbol
pdg
Name
(GenBank) Ultraviolet N-glycosylase/AP lyase
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
cafe
Corynebacterium afermentans subsp. lipophilum
Pathway
cafe03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cafe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CAFEL_00785 (pdg)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cafe03400
]
CAFEL_00785 (pdg)
Enzymes [BR:
cafe01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CAFEL_00785 (pdg)
DNA repair and recombination proteins [BR:
cafe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CAFEL_00785 (pdg)
Prokaryotic type
CAFEL_00785 (pdg)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
Motif
Other DBs
NCBI-ProteinID:
WJY57947
LinkDB
All DBs
Position
190195..190977
Genome browser
AA seq
260 aa
AA seq
DB search
MSVMSSTSPKKHRRPGAHPAAKGAETDLGRTRRARRINRTLAETFPDAHAELDFSNPLEL
LVATVLSAQTTDVRVNMVTPALFAKYPTAEAYAEADQAEVEELIRSTGFYRSKAKNLIGL
GQKLVTDFGGEVPTKLEDLVSLPGVGRKTAHVVRGNAFGIPGLTVDTHFQRLVGRLMLTD
ETDPVKIEHAIAKLIERREWTMFSHRIIFHGRRICHARKPACGVCPIAFDCPSFGTGPVD
PEAAADLVTGPERDHILGLA
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtcatgtcctccacctctccgaagaagcaccgccgtcctggggcgcacccggcg
gcgaagggggcggagacggatttagggcgcaccaggagggcccgccgcatcaatcgcacg
ctggcggagacgttcccagacgcgcacgctgaactggacttttccaacccgctggagctg
ctggtggcaacggtgctctcggcgcagaccactgacgtgcgcgtcaacatggtcacgccg
gcgttgtttgccaagtaccccaccgccgaagcgtacgcggaagcggatcaggcggaggtg
gaggagctcatccgctccaccggtttttaccgctcgaaagccaaaaatctgattggcctg
ggacagaagcttgtcaccgatttcggcggggaagtgcccaccaagctggaggatctcgtg
tcgcttcctggggtgggccgcaagacggcgcacgtggtgcgcggcaacgcgttcggcatc
ccggggttgacggtggacacgcatttccaacggctggtggggcgcctcatgctcaccgat
gagacggacccggtgaagatcgagcacgccatcgccaagctgattgagcgccgcgagtgg
accatgttctcccaccgcatcatcttccacggccgccgcatctgccacgcccgtaaaccg
gcgtgcggcgtgtgcccgatcgcgttcgactgccccagcttcggcaccggcccggtcgac
cccgaggcggccgcggacctggtcacgggcccggagcgcgaccacatcctggggctcgca
tga
DBGET
integrated database retrieval system
