Corynebacterium afermentans subsp. lipophilum: CAFEL_04740
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Entry
CAFEL_04740 CDS
T09361
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cafe
Corynebacterium afermentans subsp. lipophilum
Pathway
cafe03030
DNA replication
cafe03410
Base excision repair
cafe03420
Nucleotide excision repair
cafe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cafe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CAFEL_04740 (ligA)
03410 Base excision repair
CAFEL_04740 (ligA)
03420 Nucleotide excision repair
CAFEL_04740 (ligA)
03430 Mismatch repair
CAFEL_04740 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cafe03032
]
CAFEL_04740 (ligA)
03400 DNA repair and recombination proteins [BR:
cafe03400
]
CAFEL_04740 (ligA)
Enzymes [BR:
cafe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CAFEL_04740 (ligA)
DNA replication proteins [BR:
cafe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CAFEL_04740 (ligA)
DNA repair and recombination proteins [BR:
cafe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CAFEL_04740 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CAFEL_04740 (ligA)
MMR (mismatch excision repair)
DNA ligase
CAFEL_04740 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CAFEL_04740 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
HMBD
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
WJY58724
LinkDB
All DBs
Position
984986..987037
Genome browser
AA seq
683 aa
AA seq
DB search
MTALDSTPVSEISADLHREWDELAAKVRKHRDLYYNGQPVITDGEFDELFRSLQKLEEDH
PELAVPDSPTKEVGAPANDTAFADVTHPERMMSLDNVFNEDEMREWLAKAPGPYLTELKI
DGLSIDLVYENGELTRAATRGDGTTGEDITANARVIEDIPQKLTGDAPAFLEVRGEVFIR
PEDFPELNELRQKEGGKPFANPRNTAAGGLRQKNPEDVKKRKLRMICHGIGAREGFTPES
QHEAYEKLAEWGLPVSEYTRRAESAEEVIEAVNYWGEHRNGAIHEMDGLVVKVDSVAEQR
ALGATSRAPRWAIAYKYPPQEVTTKLNDIEVSVGRTGRATPFAVLEPVFVSGSTVSMATL
HNQHEVKRKGVMIGDTVVVRKAGEIIPEVLGPVADLRDGTEREFVYPENCPVCGTKLAPA
KEGDADWRCPNTRSCPAQLATRLEYIASRGAFDIEALGEKGAQDLIASGVLKDEAKLFDL
TEEDLKKSSVYTRKDGEVNASGKKLLANLDTAKNADLWRVIVALSIRHVGPTAARALASR
FHSMRSLIDAPTADLAETDGVGDVIAESFKEWFTVDWHQNIVDTWAAAGVTMEADEEDRA
PQTLEGLTIVATGTLEGFTRDEIKEAILSRGGKAAGSVSKKTDYVVVGENAGSKAAKAEE
LGRPILNEEQFVQLLEGGPDALS
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
gtgacggcgctagactcgacacccgtgagtgaaatttccgctgatctgcaccgtgaatgg
gacgagctggccgcgaaggtgcgcaagcaccgggacctgtattacaacggccagccggtg
atcaccgacggcgagttcgacgagctgttccgtagccttcagaagctggaagaggaccac
ccagagctggccgtgccggactcgcctaccaaggaggtcggcgcgcccgctaacgacacc
gcgttcgcggacgtcacccatccagagcgcatgatgagcctggacaacgtcttcaacgaa
gacgagatgcgcgagtggctcgccaaagcccccggcccgtacctcacggagttgaagatc
gacgggctgtccatcgatctggtctacgaaaacggcgagttgacccgcgcggccacccgc
ggcgacggcaccactggcgaggacatcaccgccaacgcacgcgtgatcgaggacatcccg
cagaagctcactggcgacgccccggcgttcctggaggtccgcggcgaggtgttcatccgc
cccgaggacttcccggagctcaacgagctgcgccagaaagaaggcggcaaaccgtttgcc
aacccgcgcaacaccgcggctggtgggctgaggcagaagaacccggaggacgtgaagaag
cgaaagctccgcatgatttgccacggtataggcgcgcgcgagggcttcaccccggaaagc
caacacgaggcctacgagaagctcgccgagtggggactgccggtcagcgagtacacgcgc
cgggcggagtcggccgaggaggtcatcgaggccgtcaactactggggcgagcaccgcaac
ggcgccatccacgagatggacggcctggtggtcaaggtcgatagcgtcgccgagcagcgc
gccctgggtgcgacctcccgcgcgccgcgctgggccatcgcgtacaagtacccgccgcag
gaggtgaccacgaagctcaacgacatcgaggtctccgtgggccgcaccggccgcgccacc
ccgttcgcggtgctcgagccggtgttcgtctccggctcgacggtgtccatggccacgctg
cacaaccagcacgaggtcaaacgcaagggtgtgatgatcggcgacactgtcgtggtgcgc
aaggccggcgagatcatcccggaagtgctcggcccggtcgcggatctccgcgacggcacc
gagcgcgagttcgtctaccccgaaaactgccccgtctgcggcacgaagctcgcgcccgcg
aaggagggcgacgcggactggcgctgccccaacacccgctcctgccccgcgcagcttgcc
acccgcctggagtacatcgcctcgcgcggcgcgttcgacattgaggcgctcggggagaag
ggcgcgcaggacctcatcgcctccggcgtgctgaaggacgaggcgaaactgttcgacctc
accgaggaggacctgaaaaaatccagcgtgtacacccgcaaggacggcgaggtcaacgcc
tccggcaagaagcttctggccaacttggacaccgccaaaaacgccgacctgtggcgcgtc
atcgtcgcgctatctatccgccacgtcggccccaccgcggcacgcgcgctcgcgtcgcgc
ttccactcgatgcgttcgcttatcgacgcaccaacggccgacctcgccgaaaccgacggc
gtcggcgacgtgatcgccgaaagcttcaaagagtggttcaccgtggactggcaccaaaac
atcgtggatacctgggccgcagccggcgtgaccatggaagcggacgaggaggaccgcgcc
ccgcagacgctggaggggctgaccatcgttgccaccggcacgctggagggcttcacccgc
gacgagatcaaagaagccatcttgtcacgcggcggcaaggcggccggctcggtgtcgaag
aagaccgattacgtggtcgtgggcgaaaacgccggctccaaggccgcgaaggcggaggag
ctgggacggccgatccttaacgaggagcagtttgtgcagctgctcgagggcgggccagac
gcgcttagctaa
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