Caloramator sp. E03: FDN13_04905
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Entry
FDN13_04905 CDS
T05994
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cale
Caloramator sp. E03
Pathway
cale03030
DNA replication
cale03410
Base excision repair
cale03420
Nucleotide excision repair
cale03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cale00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FDN13_04905 (ligA)
03410 Base excision repair
FDN13_04905 (ligA)
03420 Nucleotide excision repair
FDN13_04905 (ligA)
03430 Mismatch repair
FDN13_04905 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cale03032
]
FDN13_04905 (ligA)
03400 DNA repair and recombination proteins [BR:
cale03400
]
FDN13_04905 (ligA)
Enzymes [BR:
cale01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FDN13_04905 (ligA)
DNA replication proteins [BR:
cale03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FDN13_04905 (ligA)
DNA repair and recombination proteins [BR:
cale03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FDN13_04905 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FDN13_04905 (ligA)
MMR (mismatch excision repair)
DNA ligase
FDN13_04905 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FDN13_04905 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
PTCB-BRCT
HHH
RNA_ligase
5_3_exonuc
zf-tcix
HHH_8
Lig_C
DUF4908
Zn_Ribbon_TF
zf_Rg
Telomerase_RBD
Motif
Other DBs
NCBI-ProteinID:
QCX33093
UniProt:
A0A5B7THU2
LinkDB
All DBs
Position
complement(948073..950061)
Genome browser
AA seq
662 aa
AA seq
DB search
MESIKKRIEDLRKEIEYHNYRYYVLDDPQISDFEYDKMLKELEKLEKQHPEFYDENSPTQ
RVGGVPLKEFKQVRHNIPMLSLQDVFSFEELRDWDRRVKGEVEAEYVVELKIDGLSVCLA
YENGVLKTAATRGDGIIGEDVTLNVRTIKSVPLKIGYPYALEVRGEVYMPKDAFEKLNIQ
REEMEQPTFANPRNAAAGSLRQLDSSITAERKLDIFIFNVQRIEGKSFEKHSEALEFLKS
LGFKVSPERIVCKNIDEVIENIEKLSQIRGELPFEIDGIVVKVNELNYREILGQTAKTPR
WAVAYKFPAEKKKTKVKDIIVQVGRTGAITPTALLEPVRIAGSTVSRATLHNEDYIRQKD
IRIGDSVIIQKAGEIIPEVVEVVFEDRDGDEVIFKMPSKCPECGGDVVREEGEAALRCTN
ISCPAQLKRSIIHFASRDAMNIEGLGPQIINLLMENNLIHDAADLYYLKFEDIVNLERMG
KKSAQNLIDAIERSKGNDIDKFIFGLGIRYIGSKAAKNLAKYFKKIDNLLKSSYEELIQV
EEIGDKMAQSIISFFKEEHNKNLIEKFKNAGINFELLEKEDNKNKIFEGLTFVLTGSLSR
YTRKEAESIIESLGGKVSSSVSKKTNYVLAGEDAGSKLKKAQELQIKIISENEFEDMIRG
VV
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggaaagtataaaaaaacgtattgaagatttaagaaaagaaatagaataccataactat
agatattatgtcttagatgatccgcaaatctctgattttgaatacgataaaatgttgaag
gaacttgaaaaattagaaaaacagcatcctgaattttacgatgaaaactctccaactcaa
agagttggaggagttccattaaaagagtttaagcaggttaggcataatatacctatgcta
agccttcaggatgttttcagctttgaagagcttagggactgggatagaagagttaaaggc
gaggttgaggcagaatatgtagttgaacttaaaatagatggattatctgtttgcttagct
tatgaaaatggagttttaaaaactgctgcaacaaggggggatggaataataggtgaggat
gtaactttaaatgtaagaacgattaaaagcgttccattgaagataggctatccttatgct
cttgaggtgagaggagaagtctatatgcctaaggatgcctttgaaaagcttaacattcaa
agggaggagatggaacagcctacctttgcaaatcctcgaaatgcagcagctggttcttta
aggcagcttgattcaagtattactgctgaaaggaagcttgatatttttatttttaatgtt
caaagaatagagggaaaaagttttgaaaagcatagtgaagccttggaatttctgaaatcc
ttaggatttaaagtaagtcctgaaagaatagtttgcaaaaatattgatgaagttattgaa
aatatagaaaagctttcacaaataagaggagagcttccatttgaaatagacggtatagtt
gtaaaggtaaatgaattgaattacagagaaatattaggacaaacagctaaaactccaaga
tgggcagttgcatataaatttcctgctgaaaagaaaaagactaaggttaaggatataata
gtacaggttggaaggactggtgcgataactccaacagcactattagagcctgttaggata
gcaggatctactgtttcaagggcaacgcttcataatgaagattacataagacaaaaggat
ataagaataggagatagcgttataatacaaaaagcaggagagataataccagaggttgtt
gaggtggtatttgaggatagggatggagatgaagtaatatttaaaatgccttcaaagtgt
ccggagtgtggtggagatgttgtaagagaggaaggagaggcagctttaagatgtacaaat
atatcctgtccagcacagcttaaaaggagcataatacattttgcttcaagggatgcaatg
aacatagaaggccttggacctcaaataataaaccttcttatggaaaataacctaattcat
gacgcggcagatttatattatttaaaattcgaagatatagtaaaccttgaaaggatgggg
aaaaaatctgctcaaaaccttattgatgctatagaaagatcaaaaggaaatgacatagat
aaatttatattcgggcttgggataagatacataggaagtaaagctgctaagaaccttgca
aaatactttaaaaaaatagataacttattaaaatcttcttatgaagaactaatccaggtt
gaagaaattggggataaaatggctcaaagtataatatcattttttaaagaggagcataat
aaaaatcttatagaaaagtttaaaaatgcaggaataaactttgagcttttagaaaaggaa
gataataaaaataaaatatttgaaggcttgacttttgttttaacaggaagcctttctaga
tatacaagaaaagaagcagagagcataattgaatctttaggaggaaaagtttcatcaagt
gtttcaaaaaagacaaactatgtacttgcaggggaggatgctggaagtaagcttaaaaaa
gctcaagaattgcagattaaaataatttctgaaaatgaatttgaagatatgattaggggt
gttgtatga
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