Coraliomargarita algicola: SH580_01890
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Entry
SH580_01890 CDS
T10130
Name
(GenBank) efflux RND transporter periplasmic adaptor subunit
KO
K03585
membrane fusion protein, multidrug efflux system
Organism
calg Coraliomargarita algicola
Pathway
calg01501
beta-Lactam resistance
calg01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
calg00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
SH580_01890
01503 Cationic antimicrobial peptide (CAMP) resistance
SH580_01890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
calg03036
]
SH580_01890
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
calg02000
]
SH580_01890
01504 Antimicrobial resistance genes [BR:
calg01504
]
SH580_01890
Chromosome and associated proteins [BR:
calg03036
]
Prokaryotic type
Chromosome partitioning proteins
Divisome proteins
SH580_01890
Transporters [BR:
calg02000
]
Other transporters
Accessory factors involved in transport [TC:
8
]
SH580_01890
Antimicrobial resistance genes [BR:
calg01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
SH580_01890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSH_RND
Beta-barrel_RND
RND-MFP_C
HH_MFP_RND
Beta-barrel_RND_2
BSH_CusB
HH_CyaD
HH_AAEA_pHBA
HH_EMRA
VWA_3_C
YknX_C
THOC7
BSH_CzcB
HH_YBHG
Motif
Other DBs
NCBI-ProteinID:
WPJ96452
UniProt:
A0ABZ0RK64
LinkDB
All DBs
Position
492258..493469
Genome browser
AA seq
403 aa
AA seq
DB search
MKTQQSFPRSITHIAVALLVTTQLLVLAACSEPSEASNSSGSAAAAPALVVTVRNVATEA
VTLKRELSGRTAPLRIAEVRARVNGIIEKRHFVEGAIVEAGELLYEIDPAPYQAQLDSAK
ANLARAEASYASAQLQADRFESLVETNAVSRQNYDDAKAAALALKAEIAAAQASVRVAEI
NLGYTRVTAPISGRIGQAEVTEGAYVQQATATLLGTIQQLDTLYLDLTESAEEVLQLKEA
LATGELKSADGENTAIEVILSDGTVYPKLGSLQFSDVTVNSTTGTVKLRATVPNPDSKLL
PGMFLRARLVEGVDPDAILIPHSLVSRNSKGQATVLLVNAQNTVELRTIETERSIGNAWL
VTGGLKVGESIITDNLQKIRPGMTVQPKAQSETDAQNQNQPAA
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacacagcagtcattcccccgttcgattactcacatcgcagtcgccctcttggtc
acgactcagttgctagtgctagccgcctgcagcgaacccagtgaagccagtaattccagc
ggcagcgccgcggccgccccggctctggtcgtgacagtgcgcaacgtggcaacggaggcg
gtgacattgaagcgcgagttgtccggccgcaccgctcctctacgcatcgcagaagtgcgg
gcacgggtgaatggcatcattgaaaagcgccatttcgtggaaggtgccatcgttgaagcg
ggtgaactactctatgaaattgatccggccccttaccaagctcaactggactcagccaaa
gccaaccttgcccgtgccgaagcaagctacgcatcggcacagttgcaagccgaccgcttc
gagagtttggttgagaccaatgccgtctcacgtcaaaactatgacgatgccaaagccgct
gcacttgcgctaaaagctgaaatcgcagcagcccaggccagtgtgcgcgtcgcagaaatc
aacctgggctacacccgcgtgaccgcgcccattagtggtcggatcgggcaagctgaagtc
accgaaggtgcctacgtgcaacaagccacggccacattgctgggcactattcagcaactg
gacaccttgtatctggatctcaccgaatccgccgaagaagtgctccagctcaaagaagcc
ctggccacgggagaactcaaaagcgcagacggagagaatacggccatcgaagtgattctt
tcagacggcactgtgtatcccaaactcggctcgttgcaattttccgacgtcacggtcaac
tcgaccaccggcacggtgaaactgcgggccacggtgcccaacccggattccaaactcttg
ccgggcatgtttctgcgcgcgcgtcttgtcgagggggtcgatcccgatgccatcctcatc
ccccactctctggtcagtcgcaacagtaaaggtcaagccaccgtgttgttggtcaatgct
cagaacaccgtggagctacgcacgattgaaaccgaacgctccatcggcaacgcctggttg
gtgaccggcggcctgaaggtgggcgaatcaatcattaccgacaatctgcaaaagattcgt
cccggcatgaccgtgcagccgaaagctcaatcggagacggacgcacaaaaccagaatcag
cccgccgcatag
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