Coraliomargarita algicola: SH580_18660
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Entry
SH580_18660 CDS
T10130
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
calg Coraliomargarita algicola
Pathway
calg03030
DNA replication
calg03410
Base excision repair
calg03420
Nucleotide excision repair
calg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
calg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SH580_18660 (ligA)
03410 Base excision repair
SH580_18660 (ligA)
03420 Nucleotide excision repair
SH580_18660 (ligA)
03430 Mismatch repair
SH580_18660 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
calg03032
]
SH580_18660 (ligA)
03400 DNA repair and recombination proteins [BR:
calg03400
]
SH580_18660 (ligA)
Enzymes [BR:
calg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SH580_18660 (ligA)
DNA replication proteins [BR:
calg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SH580_18660 (ligA)
DNA repair and recombination proteins [BR:
calg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SH580_18660 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SH580_18660 (ligA)
MMR (mismatch excision repair)
DNA ligase
SH580_18660 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SH580_18660 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
RNA_ligase
RNA_pol_A_CTD
eIF3_N
HHH_3
Motif
Other DBs
NCBI-ProteinID:
WPJ95445
LinkDB
All DBs
Position
complement(4523655..4525652)
Genome browser
AA seq
665 aa
AA seq
DB search
MADPQKTIARLRAEIAEHDRLYYKEAQPKIDDQAYDRLKAELAQLEAANPEFDFGAAPSP
TQSVGDDRLEAFESYRHRKPMLSLDNTYSSAELIEFGQRLLKRFPEQALTYLVEPKIDGV
AVSLSYEDGALVRAVSRGNGIEGDDITSNVRGIRGLPDKIQGAPTVLEVRGEIYMRHQEF
ERINAARAAEGQALYANPRNLAAGTIKLLDPAEARSRQLDIVLYGIGACEPGNYFSTQSE
IQQKLKEWQFPVLEKYWLADDIESAWKCIEELDTLRQNFAYPTDGAVVKLNDFAQQEEAG
YTSKAPRWAIAYKFEAERAETLLKEISLQIGRTGAVTPVAILEPVQLAGTTVSRATLHNE
DEIQRKDIRPGDTVLVQKAGEIIPQVLSVNLAKRPADSQPFIFGEHLKALGIEAERDPTQ
AVWRIVSKDDPIRQQRALEHFASRACMDIENLGSAVVEQLVKRGMVQTQADLYTLTEAQL
LELDKFAEKSAQNLIAALEASKQRELWQLIHGLGIPHVGKQSAKDLEANFDSLEAIASAT
EEQLEAVDGIGSIMAQSIHAWFADSDNQSLIQQLKAHGLNFESARQAQADGVLAGKTVVL
TGALPTLTRDEATKMIEAAGGRTSSSVSKKTDYVLAGEAAGSKYAKAEKLGIAILDEDEF
KQLVG
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggctgatccgcagaaaacaattgcccgactacgcgccgaaatcgcagagcacgaccgt
ctctactacaaagaggcgcagcccaagatcgacgatcaggcctacgatcgcctcaaggcc
gagctggcccaattagaagccgccaacccggaatttgacttcggtgccgccccctcgccc
actcaaagcgtgggcgacgaccgcttggaagcctttgagagctaccgtcaccgcaaaccg
atgctgagcctggataatacctatagctcggcagaactgatcgagtttggccaacgactg
ctcaagcgctttccggagcaagcgctcacctatttggtcgagcccaagatcgacggtgtc
gccgtcagcctcagctatgaggacggagcactcgtgcgcgccgtctcccgtggcaacggc
atcgagggtgacgacattacctccaacgtgcgcggcatccgcggcttaccggacaagatt
caaggcgcacccaccgtgctggaggtgcgcggcgaaatctacatgcgccaccaggaattc
gagcgcatcaacgccgcccgcgcagcggaggggcaagcgctctatgccaacccacgtaat
ctcgccgcaggcaccatcaaattactcgaccctgccgaggcccgcagtcgccaactcgac
atcgtgctctacggcatcggagcttgcgaaccaggcaactatttcagcacacaatccgag
attcagcaaaaactgaaggaatggcagttcccggtgctggagaagtattggctcgccgat
gatatagaaagcgcctggaagtgcatcgaagaactggatacactgcggcaaaatttcgcc
tacccgaccgacggcgcggtggtcaaactcaacgacttcgcacaacaagaagaagctggc
tacacctccaaagcaccccgctgggcgatcgcctacaagttcgaagccgaacgcgccgag
actttactcaaagaaatcagcctccagatcggccgcaccggcgccgttacccccgtcgcc
attttagagccggtgcaactcgcaggcaccaccgtctcacgagccaccttgcacaacgag
gacgagatccagcgcaaagacattcgccccggcgacacggtgctggtgcaaaaggccggc
gaaatcatcccacaagtgctcagcgtcaatctcgcgaaacgccccgccgacagccagcct
ttcatctttggcgaacacctcaaagcgctcggcatcgaggccgaacgcgaccccacgcaa
gcagtatggcgcatcgtgagcaaggacgacccgatccgccagcaacgcgcgctggaacac
ttcgccagccgcgcttgtatggacatcgaaaacctcggcagcgccgtcgtcgaacagttg
gtcaagcgcggcatggtccagacccaagccgacctctacaccctgaccgaagcgcaattg
ctcgaactagataagttcgccgagaagtcggctcaaaatctcatcgccgcgttggaagcc
agcaagcagcgcgagctctggcaactcatccacgggctcggcatcccgcacgtgggcaaa
caatccgccaaggatctcgaagccaacttcgactcgctcgaagccatcgccagcgccacc
gaagaacagctcgaagccgtcgacggcatcggcagcatcatggcgcagagcattcacgcc
tggtttgccgacagcgacaaccagagcctcatccaacaactcaaagcccacgggctcaat
tttgaaagtgctcgccaagcccaagccgacggcgtgctcgcaggcaaaacagtggtgctg
acgggagccctacccaccctcacccgcgacgaagccactaaaatgattgaagccgccggt
ggccgcaccagctccagtgtcagtaaaaagaccgactatgtgctcgccggcgaagccgcc
ggctccaaatacgccaaagccgaaaagctaggcatcgcgattctagacgaagacgagttc
aagcaactagtcggttga
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