Candidatus Contubernalis alkaliaceticus: HUE98_05115
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Entry
HUE98_05115 CDS
T07972
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
calk
Candidatus Contubernalis alkaliaceticus
Pathway
calk03030
DNA replication
calk03410
Base excision repair
calk03420
Nucleotide excision repair
calk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
calk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HUE98_05115 (ligA)
03410 Base excision repair
HUE98_05115 (ligA)
03420 Nucleotide excision repair
HUE98_05115 (ligA)
03430 Mismatch repair
HUE98_05115 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
calk03032
]
HUE98_05115 (ligA)
03400 DNA repair and recombination proteins [BR:
calk03400
]
HUE98_05115 (ligA)
Enzymes [BR:
calk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HUE98_05115 (ligA)
DNA replication proteins [BR:
calk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HUE98_05115 (ligA)
DNA repair and recombination proteins [BR:
calk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HUE98_05115 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HUE98_05115 (ligA)
MMR (mismatch excision repair)
DNA ligase
HUE98_05115 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HUE98_05115 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
BRCT_2
RNA_ligase
RNA_pol_A_CTD
Zn_ribbon_NUD
APG6
Motif
Other DBs
NCBI-ProteinID:
UNC91519
LinkDB
All DBs
Position
1075527..1077533
Genome browser
AA seq
668 aa
AA seq
DB search
MDSNEAGIKVRQLAEEINKHDYNYYVLDSPVISDREYDLMKRELEKLEKEYPQLVTPDSP
TQRVGGKPLETFTSVSHAVPMLSLDNAFNENELLDFVRRAKNLSGVSNLEYVVEPKMDGL
AVSLLYQDGGLVRGATRGDGQVGEDITHNLRTIKSIPLKLKERVDLEVRGEVYFPRKAFQ
DLNDRRAEQGEPLFANPRNAAAGSMRQLDPAVAASRPLNIYIYGMGSFEGFPLKNHLEML
NYLKSLGLRVNPHTAVYTDFEEVIQACKDWSLKRYELPYEIDGMVIKINDLKIQAQVGYT
TRSPRWAVAFKFPAEQVETTVEDIQVSVGRTGALTPIALLTPVKVSGSVIKRASLHNQDI
LREKGVKIGDRVIIHKAGEVIPELVKVLKEKRTGQEKDFIMPENCPACGQEVTLIPGEVA
LRCLNSTCPVQMYERIVHFASRGAMDIEGLGPAAARLLLENGLVEDVADLYYLNKERLMS
LDRMGEKSASKLLEALEVSKNNPLSKLLNGLGSRFLGGKGSRVIAEHFKSLDRIISASVE
EMISIPEIGPKIAASVFEFFKNPANLKVVEKLRSTGVNFKQVQEQGKAQEQLFEGQAFVL
TGKLQNHSRQEAQNLIEGLGGRVTSSVSRSTNYVVVGENPGSKLEQARSLEITILTEEQL
QQMASSEK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggactctaatgaagccggaataaaagttcggcagttggcagaagagataaataaacat
gactataattattatgtgctggattctccggtaatatcagaccgggaatatgacttgatg
aagagggaactggaaaaacttgagaaagaatatccccagctggttactcctgattctcct
actcaaagggtaggggggaagcccttagaaacctttacctcggtcagtcacgctgttccc
atgctcagcctggataatgctttcaatgaaaatgagcttctagactttgtacgcagagca
aaaaatctaagcggagtttctaatttagagtatgtggttgaacccaaaatggacgggctg
gcagtatctttgctttatcaggatgggggcctggtcaggggtgcaacccggggagatggt
caagtgggggaggatattactcataatctccggactataaaaagtattcccttaaaactg
aaagaaagagtagatttggaggtgaggggagaagtttattttccccggaaagcatttcag
gacctaaatgaccgcagagctgagcagggtgaacctttgtttgcaaatccccgaaatgcc
gctgccggttctatgaggcagctggaccctgcagttgcagcctccaggcctttaaatatt
tacatttacggtatgggcagttttgaaggatttcctctaaaaaatcatctagaaatgctg
aactatctaaaaagtttgggcctcagggtaaacccccatactgctgtatacactgatttt
gaagaagtgattcaggcctgtaaagattggtccttaaaaagatatgaacttccttatgaa
attgatgggatggttataaaaataaatgatcttaaaatacaagcccaggtaggttacacc
accaggagcccccgctgggctgtagcttttaagtttccggcggaacaggtagagaccact
gtggaggatattcaggttagcgtgggcaggactggggctctaacccctattgctctgctg
accccggtgaaggtttccgggtcagtgattaagagagcgtctttacataatcaggatatc
cttcgggaaaaaggggttaaaattggggaccgggtaattattcacaaggcaggagaagtt
attcctgagctggttaaagttctaaaagagaagaggaccggccaggaaaaagattttatc
atgcctgaaaactgtcctgcctgcggccaggaggtaacattaattcccggggaggtggct
ttgcgctgtttgaattccacttgtcctgtgcagatgtacgagagaattgtacattttgct
tcccggggggccatggatatcgaaggattgggtccagcggctgccaggctgctcctggaa
aatggtctggtggaagatgtggcagacctgtattatctgaataaagaacgcctgatgtct
ctggataggatgggggaaaagtcagcttctaaactcctggaggccctggaggttagtaaa
aacaaccccttgagcaagctcttaaatgggctgggctcccgttttttagggggaaaaggc
tcccgggttattgcagagcacttcaagagcttagatcgtattatttccgcctcggtggaa
gagatgatttctatcccggaaattgggcctaaaattgcggccagtgtttttgaatttttt
aagaatcctgccaaccttaaggtggtggaaaaactccgcagcaccggggttaattttaaa
caggttcaggaacaggggaaggctcaggaacagctctttgagggtcaggcctttgtgctg
acggggaaactgcaaaaccacagccgccaggaagcgcaaaacctgatcgaaggtttagga
ggcagggttacatcctccgtaagccgcagcacaaactatgttgtagtaggggaaaacccc
ggaagtaagctggaacaggcccgttctctggaaatcacaatattgaccgaagaacaattg
cagcaaatggcgtccagtgaaaaataa
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