Candidatus Chlorohelix allophototropha: OZ401_000082
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Entry
OZ401_000082 CDS
T09929
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
call
Candidatus Chlorohelix allophototropha
Pathway
call03030
DNA replication
call03410
Base excision repair
call03420
Nucleotide excision repair
call03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
call00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OZ401_000082 (ligA)
03410 Base excision repair
OZ401_000082 (ligA)
03420 Nucleotide excision repair
OZ401_000082 (ligA)
03430 Mismatch repair
OZ401_000082 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
call03032
]
OZ401_000082 (ligA)
03400 DNA repair and recombination proteins [BR:
call03400
]
OZ401_000082 (ligA)
Enzymes [BR:
call01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OZ401_000082 (ligA)
DNA replication proteins [BR:
call03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OZ401_000082 (ligA)
DNA repair and recombination proteins [BR:
call03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OZ401_000082 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OZ401_000082 (ligA)
MMR (mismatch excision repair)
DNA ligase
OZ401_000082 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OZ401_000082 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
PTCB-BRCT
DNA_ligase_ZBD
HHH
BRCT_2
ArdA
5_3_exonuc
UPF0758_N
Mustang
Motif
Other DBs
NCBI-ProteinID:
WJW66837
LinkDB
All DBs
Position
1:88797..90839
Genome browser
AA seq
680 aa
AA seq
DB search
MNHTPENEDALSRRVAELIHRLEYHNYRYYILDDPIISDVEYDALYRELKQIEESHPELI
SDDSPTRRVGVSTAQTDFAKVRHPYPMLSLSNVFSMEDLVRWDTAARKFFPGKVDFEYVV
EPKIDGLSVALTYEDGVLVRGATRGDGTIGEDITLNIKTIKSVPLKLRQLEGKPVPRRIE
VRGEVYLAIKDFETLNRELAEKGEKLFANPRNSAAGSLRQKDPAISASRPLSIFLYNLGY
IEDGLEIQTQTQALEYFRELGFRTAKDIKLCRTLEEVENCVRDWLARRDSLDFEIDGAVI
KLNDFKTQELLGYVGRDPRWATAYKFPAREATTVLKAITISVRRTGSITPKAVLEPVQIG
GTTVQNATLFNEDEIRRLHLKIGDTVLVKRAGDVIPNIVKVLDERRTGNETDFEMPKNCP
SCGFPTRRDPEYAVLYCTNNSFDCPDRIRDWINHFTQTMGMEGLGVKITNRFYDEGFIRD
FADIYSLKKEQLTSLERFGERLADKLLAQIEESKQRPLSQLLAALGIEGIGQKAAEMLAQ
HFKSLARLRAATIDEIAEIKGMGKVAAQSIVDFFANARNVALVDKLLAFGVRTSDPEDSD
EKSSKPFSGMTFVLTGKLLNYTRQSAEELLKRKGATVGSSVSKNTTYVVAGEDSGSKLAK
AQALGIKILSEQEFEKLVKD
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgaaccatactccagaaaatgaagatgcgttatcgcggcgggtcgctgagctaatacat
cggcttgaatatcacaattaccgttactacatactagatgacccaattattagcgatgtc
gaatatgacgctttatatcgcgaactaaagcaaatagaggaatctcaccccgaactgatt
tcagatgattcgcctactcgccgggtgggcgtttctaccgctcagaccgattttgctaaa
gtgcgccacccttaccccatgttgagcttgagtaatgtgtttagcatggaagatttggtg
cgttgggatactgccgctcgcaaattctttcccggcaaggttgactttgaatatgtagta
gaacctaaaattgacggactttcggttgcgcttacctatgaggatggcgtgttggtgcgt
ggcgcaacgcggggtgatggcactattggcgaagatattacactgaatatcaagaccatt
aagagcgtgccgctcaagttgcgtcaattagagggtaagcctgttccccgccgcattgaa
gttaggggcgaggtttatctggctataaaagattttgaaacactgaatcgtgaattggca
gaaaagggggagaagctttttgccaaccctcgcaacagcgctgccggttctttacgccaa
aaagaccctgccatttcagcttcgcgaccgcttagtatctttctatataacctcggttat
atagaagatggcttggaaattcaaacccagactcaagcgctcgaatattttcgggaactt
ggctttcgcaccgccaaagatattaagctatgccgaactcttgaagaagtggaaaactgc
gtcagagattggctggcacgccgcgactcgctcgattttgagattgacggcgcagtgatt
aagcttaacgatttcaagactcaggaattgttgggctatgtagggcgcgacccgcgttgg
gctaccgcttataaatttccggcgcgagaagctactaccgttttgaaagctattaccata
tcggtacggcgcacgggtagtatcaccccaaaagcagtacttgagccggtgcaaatcggc
ggtactactgtacaaaacgctaccctctttaatgaggatgagattcgccgcttgcatttg
aaaatcggcgatacggtattggttaagcgcgccggagatgtgattcccaacattgtgaag
gttctcgatgagcggcgcacaggcaatgaaaccgacttcgagatgcccaaaaattgcccc
agttgtggcttcccaacccgccgtgaccctgaatacgcggttttatattgtaccaacaac
tcgtttgattgccctgaccgcatccgtgactggattaatcattttacccagacgatgggt
atggaagggttgggcgtaaaaataaccaaccgtttctatgatgaaggctttatccgcgac
tttgccgatatttacagccttaaaaaagaacagttgacctcccttgagcgttttggcgaa
agacttgccgataagttgttggcacaaattgaggaaagcaaacaacgcccgctctcgcaa
ctgctggcagctttgggaattgagggtatcgggcagaaagcggctgaaatgctggcacag
cactttaagagccttgcgcgtctaagggctgctaccatagatgaaattgccgagataaaa
gggatgggtaaggttgcggcacagagtatcgttgatttttttgccaatgctcgcaacgtt
gcgttggtggataaattgctagctttcggggtgcgtactagcgacccggaagatagcgat
gagaaaagcagcaaacccttttccggtatgacctttgttttgaccggaaaattgctaaac
tatactcggcaatcggctgaggagttgctcaagcgcaaaggcgctaccgtgggcagttcg
gtcagcaaaaatacaacctatgtggttgcgggtgaggattctggaagtaaactcgcaaaa
gctcaggcgctcggaatcaaaattctatctgagcaagaatttgaaaaattggtcaaggat
tag
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