Calothrix sp. NIES-2098: NIES2098_00220
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Entry
NIES2098_00220 CDS
T08374
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
caln
Calothrix sp. NIES-2098
Pathway
caln03030
DNA replication
caln03410
Base excision repair
caln03420
Nucleotide excision repair
caln03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
caln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NIES2098_00220
03410 Base excision repair
NIES2098_00220
03420 Nucleotide excision repair
NIES2098_00220
03430 Mismatch repair
NIES2098_00220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
caln03032
]
NIES2098_00220
03400 DNA repair and recombination proteins [BR:
caln03400
]
NIES2098_00220
Enzymes [BR:
caln01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NIES2098_00220
DNA replication proteins [BR:
caln03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NIES2098_00220
DNA repair and recombination proteins [BR:
caln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NIES2098_00220
NER (nucleotide excision repair)
GGR (global genome repair) factors
NIES2098_00220
MMR (mismatch excision repair)
DNA ligase
NIES2098_00220
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NIES2098_00220
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
BRCT_2
PTCB-BRCT
RNA_pol_A_CTD
Zn_ribbon_NUD
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
BAY06912
LinkDB
All DBs
Position
32421..34454
Genome browser
AA seq
677 aa
AA seq
DB search
MIQSQPEIKRVEELRQLLQQASYAYYVIDAPIMEDAVYDQLYRELQQLETQYPELVTPDS
PTQRVGERPATQFTSVRHNIPLYSLENAFNTDELQAWDQRWRRQAPKIESVEYVTELKID
GSAIALTYQNGVLTRGATRGDGVMGEDITQNVRTIRSIPLRLNFEGLEILEKVEVRGEAF
LPLDVFKQINEERQKAGEQLFANPRNAAAGTLRQLDSRIVARRRLDFFAYTLHIPGRDDA
SIANTQWEALELLQKMGFRVNPNHKLCPSLADVGEYYNYWDTERLNLPYMTDGVVVKLNS
FKLQEQLGFTQKFPRWAVALKYPAEEAPTRVENIAVNVGRTGALTPLAEMRPVQLAGTTV
SRATLHNSDRIAQLDIRIGDTVIVRKAGEIIPEVVRVLKELRPPETQPFVMPTHCPVCGQ
PVVRELGEAVTRCVNASCAAILKGAIEHWVSRDALDIKGMGEKLVHQLVDKGLVHSVADL
YDLTEDKLYALERMGQKSAQKLIEAIAQSKNQPWSRVLYGLGIRHVGSVNAQLITDKFVS
VEKLTQARQSDIEGIYGIGAEIAESVHQWFQIHANQTLISRLEAAGLQLTTTEEITIADG
NQKLAGKTFVVTGTLPTLKRDEAKALIQKAGGKVTDSVSKKTDYLLVGEDAGSKLAKAEA
LGITQLTEAEFLQMLED
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgatacaaagtcagccagaaatcaagcgcgtagaagaactacgtcagttgttgcagcaa
gctagctatgcttattacgttatagatgcaccgatcatggaagatgcagtttatgaccag
ctgtatcgagagttgcaacaactagaaacccaatatccagaactggtgacgcccgatagt
cccactcagcgcgtgggtgaaagaccagcaacacagtttacatcggtgcggcataatatc
cctttatacagtttggaaaatgcttttaatactgatgagttgcaagcatgggatcagcgt
tggcggcgacaagcccccaaaattgagtcagtagagtatgtcacggaactgaaaattgat
ggttcggcgatcgcacttacctatcaaaatggagttcttaccagaggtgcaactagaggt
gatggggtgatgggtgaagatatcacccaaaatgtccggacaattcgctcaattcccttg
cgcttaaactttgaaggtttagaaattttagaaaaggtagaagttcggggcgaagcgttt
ttacctttggatgtgtttaaacaaatcaacgaggaaaggcaaaaagcaggcgagcaatta
ttcgccaatccccgcaatgccgcagctggtacgctcagacaattagactctagaattgta
gctcgcaggcgcttagatttctttgcttacactctgcacattccaggtagagatgatgca
agtattgccaatacgcaatgggaagctctggaacttttgcaaaagatgggtttccgcgtc
aatcccaaccataaactttgcccttccttggcagatgtgggcgaatactataactactgg
gatacagaaagactgaatttaccctacatgactgatggggtagtagtgaagctcaattcc
tttaagcttcaagaacagttgggttttactcagaaattcccccgctgggcagtagcgtta
aaatatcccgccgaagaagcacctactcgcgtggaaaatattgcggtgaatgtcggtaga
actggggctttaacaccgttagcagagatgcgcccagtacaattggcaggtacgacagtt
tcccgcgcaactttacataatagcgatcgcattgcgcaattagatatccgcattggcgat
actgtcatcgttcgtaaagctggggaaattattccagaggtggtgcgggtactcaaagaa
ctccgtcctccggagactcaaccgtttgtcatgcctactcattgcccagtctgcggacag
ccagtggtgcgtgagttgggtgaagccgttaccagatgtgtgaatgcttcttgtgccgct
atcctcaaaggtgcgattgaacattgggtaagccgcgatgctttagatattaaaggcatg
ggcgaaaagctagtacatcaactcgttgataagggtttggtgcattctgtagctgacttg
tatgacttgacagaagataaattgtatgcattagaaaggatggggcaaaagtcagcgcag
aaattaatcgaagcgatcgctcaatcgaaaaatcaaccttggtcgcgggtattgtatggt
ctaggcatccgtcatgttggcagcgtgaatgcccaattgattaccgacaagtttgtcagc
gtagaaaaactaacccaagccagacaatcagatatcgaaggcatttatgggattggtgcc
gaaattgccgaatcagtacaccaatggttccaaattcatgccaatcaaactttgatttct
cgcctagaagccgcagggttgcaattaacaactaccgaagaaataacaattgctgatggt
aatcaaaagctagctgggaaaacttttgtcgtcacaggtacgttacctaccttaaagcga
gatgaagcgaaagccttgattcaaaaagctgggggtaaggtgacagattcagtgagcaag
aaaacagattatttgcttgtaggtgaagatgcaggttctaaattagccaaagctgaagct
ttaggaattacccagttaactgaggcggaatttttgcagatgttggaggattag
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