Calothrix sp. NIES-2098: NIES2098_14060
Help
Entry
NIES2098_14060 CDS
T08374
Name
(GenBank) RND family efflux transporter MFP subunit
KO
K03585
membrane fusion protein, multidrug efflux system
Organism
caln
Calothrix sp. NIES-2098
Pathway
caln01501
beta-Lactam resistance
caln01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
caln00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
NIES2098_14060
01503 Cationic antimicrobial peptide (CAMP) resistance
NIES2098_14060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
caln03036
]
NIES2098_14060
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
caln02000
]
NIES2098_14060
01504 Antimicrobial resistance genes [BR:
caln01504
]
NIES2098_14060
Chromosome and associated proteins [BR:
caln03036
]
Prokaryotic type
Chromosome partitioning proteins
Divisome proteins
NIES2098_14060
Transporters [BR:
caln02000
]
Other transporters
Accessory factors involved in transport [TC:
8
]
NIES2098_14060
Antimicrobial resistance genes [BR:
caln01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
NIES2098_14060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HH_MFP_RND
Beta-barrel_RND_2
RND-MFP_C
HH_YBHG
YknX_C
HH_EMRA
BSH_RND
CzcB_C
DUF4407
Beta-barrel_YknX
TPR_12
ANAPC5
ATG14
Motif
Other DBs
NCBI-ProteinID:
BAY08277
LinkDB
All DBs
Position
complement(1690538..1692016)
Genome browser
AA seq
492 aa
AA seq
DB search
MTVGDESPSELEIEEPLSAEDGNFSKKLDNRPTRLWLMPLLLGTGLGFAIALGGLGAFKN
HADPQQKAVANKSASPAKPTMTVTIAAVEPASIAQTLNTTGTVAASDLIPVLPQTNGLQI
KQIPENVKEGAFVKKGQLLAVLDDSVLQAQIIQAKADVQSKQADVDSKQADVASKQATAT
SNLAIVKQRQADLAQAQARLEEAEKNFQRYQKLAASGAISQQELDTRAYTVKTAKEAVRV
AQENVRSAQANVGGGQANISIAQANVNKAEADVRGTAARVVQLQTQLGQTLVVAPVSGII
AEKLARVGDVTGVPPQTQVGNIVGGTQKLFSIIRDRKLELQAKVPDIQLPQVKVGATVEV
TSDLDRRVKLQGKVREIEPLVNDRRREATVKIDLPPTNLLKPGMFARAAITTNSARGMTL
PQKAVQAQPDGSVIVFMLSGEDIVRAQKVELGEPINGDRVQIKNGLKIGDRVVVKGAGYL
KDGDKVLISPEG
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgactgtgggtgatgaaagtccatcagaactcgaaatagaagaacctttgagcgctgag
gatgggaattttagcaaaaaattagataatagaccaactcggctgtggttaatgccgttg
ttgctaggaactggtttgggttttgcgatcgcgcttggtgggttaggtgcattcaaaaat
catgcagatccgcaacaaaaggctgtagcaaataaatcagcatccccagcgaaaccaacg
atgacagtcactatcgcagctgtagaacctgctagtatagctcagactctcaacactact
gggactgtagccgcatccgatttaattcctgtgctaccgcagacaaacggattgcaaatt
aaacaaattcccgaaaatgttaaagagggggctttcgtcaaaaaaggtcaattgctggcg
gtgttagatgattcggtactgcaagctcaaattattcaggctaaagcagatgtgcaatct
aagcaagctgatgtggattccaagcaagctgatgtagcatctaaacaggcaactgctaca
tcaaacttggcaatagttaaacaaagacaagcagatttagcacaagcacaggcgaggcta
gaagaagcggaaaagaattttcaacgctatcaaaaacttgccgcttcaggtgcaattagt
caacaagaactcgatactcgcgcttatacagtaaagactgctaaagaagcagtgcgcgtt
gcgcaagaaaatgtgcgtagcgcccaagcaaacgtgggtggcggtcaagcaaatattagc
attgcacaagcgaatgtgaataaagccgaagccgatgtgcgcggtactgcggcgagagta
gtacagttgcaaacgcaattggggcaaactttagttgttgcgcctgtttcgggaattatt
gctgaaaaactcgccagagtgggagatgtcacaggtgtacccccacaaactcaagtaggt
aatattgttggtgggacacaaaagctgttttcgattattcgcgatcgcaaattagaactg
caagccaaagttccagacattcaactcccacaggtaaaagttggtgcgacagtagaagtt
acttctgatttagatcgccgtgtcaagttgcaaggaaaagtcagagagatagaacctcta
gtcaacgatcgccgacgggaagctacagtcaaaattgacttaccaccaacaaacttactc
aaaccaggaatgtttgcccgtgcggcgattaccaccaactcagcacgaggaatgacatta
ccgcagaaagcagtacaagcgcaaccagatggcagtgtaattgtattcatgctatcgggt
gaagacattgttcgcgcccagaaagtagaactaggagaaccgattaacggtgacagagtg
caaatcaaaaacggattgaaaataggcgatcgcgtggtagttaaaggtgcaggttatctc
aaagatggtgacaaagtactgatatcccctgaaggatga
DBGET
integrated database retrieval system
