Calothrix sp. NIES-2098: NIES2098_25020
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Entry
NIES2098_25020 CDS
T08374
Name
(GenBank) putative efflux transporter, RND family, MFP subunit protein
KO
K03585
membrane fusion protein, multidrug efflux system
Organism
caln
Calothrix sp. NIES-2098
Pathway
caln01501
beta-Lactam resistance
caln01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
caln00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
NIES2098_25020
01503 Cationic antimicrobial peptide (CAMP) resistance
NIES2098_25020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
caln03036
]
NIES2098_25020
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
caln02000
]
NIES2098_25020
01504 Antimicrobial resistance genes [BR:
caln01504
]
NIES2098_25020
Chromosome and associated proteins [BR:
caln03036
]
Prokaryotic type
Chromosome partitioning proteins
Divisome proteins
NIES2098_25020
Transporters [BR:
caln02000
]
Other transporters
Accessory factors involved in transport [TC:
8
]
NIES2098_25020
Antimicrobial resistance genes [BR:
caln01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
NIES2098_25020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HlyD_D23
HlyD_3
Biotin_lipoyl_2
HlyD_2
Biotin_lipoyl
PTS_EIIA_1
CusB_dom_1
GpP-like_1st
ATG14
AAA_13
EIF3I
New_glue
Motif
Other DBs
NCBI-ProteinID:
BAY09340
LinkDB
All DBs
Position
complement(2995761..2997209)
Genome browser
AA seq
482 aa
AA seq
DB search
MFNDQSSVKLEPTHTDITAEPAPELQPKKPKRLPTIALITALALLAVGIAFGGVAWFWLF
RHASESTEATTANLQPLEVETTTAAQESIAGDSSLTGTIESVETVTTTSRIQGQIKSLPV
AEGDRVKAGQVLAIIDVKDIQAQGNQALAAIAQAQAGVTVAAAAQTQAMASKTQAEAQLN
QAEAGQQQAEAQLQEAEAQLADAQLNQRRMAMLQKDGAVSQSQLDQANTQVALIQARIKQ
AKAGIDQAKRGIDRAKAGVQQASSQVQQAQGGVEQARSQVQQAKAGQQQTLANLNYGTVT
APFAGVITKKHTEVGAIAGTGQPIVTLESTNRLRLSVAVPESLITLVRLGDEVTVQLDTV
NRSVTGHVRQMVPSANLNSRSFTVKVALDNSYKLMPGMFGRLELPRETRTVMMIPQNAVF
KRGQLEGVYVIAANDIAQLRWVKTGKVQDKKVEIVSGLEAGDRIITSNVDELRDGQQVVA
NK
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacgatcaatcgtccgtcaaattggaaccaactcatacagacattaccgcagaa
ccagccccagaactacaacccaaaaaacccaagcggctgccaacgatcgccttgattact
gcgttagctttgctcgccgtaggcatcgcatttgggggcgtggcttggttctggttattt
cgtcatgcttccgaatctacggaagcgacaaccgctaatctccaacctctagaggtggaa
actacaacggctgctcaagaatctatagctggtgacagcagcctgactggtactatcgaa
tctgtagagactgtcaccactaccagccggattcaaggacaaattaaaagtcttccagta
gcagaaggcgacagagtcaaagctggtcaagtgctggctattatcgatgttaaagatatc
caagcccaagggaatcaagcattagcagccatcgcccaagcacaagctggtgtcacagtg
gcggcggcggcgcaaacgcaagcaatggctagtaaaacccaggcagaagcacagttaaat
caagccgaggcgggacaacaacaagccgaagcccaactacaagaagcagaagcacaatta
gctgatgcccaattaaatcaacgccgtatggcaatgctgcaaaaagatggtgcagttagt
cagtcacagttggatcaggcgaatacacaagttgcattaattcaagcgcgaattaaacaa
gccaaggcgggtatcgatcaagctaaacggggaattgatcgcgccaaagctggcgtacaa
caagccagttcccaagttcaacaagcccaaggcggagtagaacaagcacgttcccaagtc
caacaagccaaagctggacaacagcaaaccctcgctaatttaaactatggcactgtcacc
gcacccttcgcaggcgtgattaccaaaaaacatacagaagttggtgcgatcgcggggaca
ggacaacctatagtgacattagaaagcaccaatcgactacgtttaagtgtcgcagtccca
gaatccttaattaccctagtcaggctaggagacgaagtgacagtacagctagatactgtg
aaccgttccgttactggtcacgtgcggcaaatggtaccttctgctaacttaaattcccgt
agttttacggtaaaagtagctttagataattcctataaattaatgccaggaatgtttggc
cgcttagaactaccgcgagaaactcgcacagtcatgatgattccgcaaaatgctgtgttt
aagcgtggtcaattagaaggagtatatgtaattgcggctaatgatattgctcaattacgc
tgggtaaaaaccgggaaagtgcaagataaaaaagtagaaattgtctccgggttagaagca
ggcgatcgcattattactagcaatgttgatgaactgcgtgatggacagcaggttgttgct
aataaataa
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