Corynebacterium ammoniagenes: CAMM_08005
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Entry
CAMM_08005 CDS
T05164
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
camg
Corynebacterium ammoniagenes
Pathway
camg03030
DNA replication
camg03410
Base excision repair
camg03420
Nucleotide excision repair
camg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
camg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CAMM_08005
03410 Base excision repair
CAMM_08005
03420 Nucleotide excision repair
CAMM_08005
03430 Mismatch repair
CAMM_08005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
camg03032
]
CAMM_08005
03400 DNA repair and recombination proteins [BR:
camg03400
]
CAMM_08005
Enzymes [BR:
camg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CAMM_08005
DNA replication proteins [BR:
camg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CAMM_08005
DNA repair and recombination proteins [BR:
camg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CAMM_08005
NER (nucleotide excision repair)
GGR (global genome repair) factors
CAMM_08005
MMR (mismatch excision repair)
DNA ligase
CAMM_08005
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CAMM_08005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
APT82866
LinkDB
All DBs
Position
complement(1737711..1739813)
Genome browser
AA seq
700 aa
AA seq
DB search
MTATESFDQLNPEEAQKRWAELAQEVRRHRELYYNEQPAIPDADFDALFQELVALESAHP
QLVVPDSPTQEVGSAPAADSAFADIEHLERLMSLDNVFNADELQDWLDRTPAEAYLAELK
IDGASIDLVYRDGKLATAATRGDGRVGEDITANARVIESIPHELQGSEEYPVPALVEIRG
EIYMRPEDFEALNEERASEGKQAFANPRNSAAGGLRMKNPDDVKKRRLRLVAHGLGAREG
FTPTSQHDAYAAIAAWGLPVSPYTERVTTSKEVQDKVKYWADHRHDAEFEMDGVVIKVDD
LGSQRSLGATSRAPRWAIAYKYPPEEVTTKLRNIEVGVGRTGRVTPYAVMDPVFVSGSTV
SMATLHNQSEVKRKGVLIGDTVIIRKAGEIIPEVLGPVEEKRDGTETEWVFPENCPSCGT
KLAPQKEGDADWRCPNTRTCPAQLSARLEYLAGRGAFDIEALGEKGAIDLIERGVLEDES
DLFDLTEELLKKSEVYTTKAGNVNASGKKLLSNLETARHTDLWRVLVALSIRHVGPTAAR
AIASRYGSLDAARSADVEDIAETDGVGLVIAESFKDWFEIDWHRTIVDKWAAAGVTMAID
ASDKPEQTLEGLTIVVTGTLENFSRDSAKEAIISRGGKASGSVSKKTDFVVAGENAGSKE
TKARDLGVTILNENGFETLLATGSGPAESEAGAEDAATEE
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
gtgactgctactgaatcatttgaccagctaaacccggaagaagcacaaaagcgttgggca
gaacttgcccaagaagtgcgacgtcatcgcgagctctactacaacgagcaaccagcaatt
cctgacgctgattttgatgctcttttccaggagctagtcgcgctggagtctgcgcatccg
cagctggtagttccagattctcccacccaggaggtgggttctgcaccggctgctgattcc
gcgtttgccgatatcgaacacctcgagcgtttgatgagcttggataatgtattcaatgct
gatgaattgcaggattggttggaccgaacgcccgcggaagcatatttggcggagctgaaa
attgatggcgcgtccattgacttggtctatcgcgacggcaagcttgctaccgccgctacg
cgcggtgatggccgagtcggcgaggatattacggccaatgcgagggtgattgaatctatt
ccgcatgaacttcaaggctctgaggaatatccggtcccagcgctggtagaaatccgtggc
gaaatttatatgcgcccggaagattttgaagcactgaatgaagaacgggcatcggaaggc
aagcaagctttcgcgaatccgcgaaattcggctgctggtggcttgaggatgaaaaaccca
gatgatgtgaaaaagcgtcgtctgcgtctggtagcacatggtctcggtgctcgtgaaggc
tttactcccacgagccagcacgatgcctacgctgccattgcggcgtggggccttccggtt
tctccttatacggagcgggtcacgacatcgaaggaagtccaggacaaggtcaagtactgg
gcagatcatcgccacgatgccgaatttgagatggatggtgtggtcatcaaagtcgatgac
cttggttcccagcgcagtctgggagcaacctctcgcgcacctcgttgggcaattgcgtac
aagtaccctccggaggaagtaaccaccaagctgcgcaatattgaagtcggcgtgggccgt
accggacgggtgaccccatatgccgtgatggatcccgtctttgtttcgggctccaccgtg
tcgatggcaacgctgcacaaccaatctgaggtcaagcgcaagggcgttttaatcggggat
accgtgattatccgcaaggcgggggagatcatccctgaggttttgggcccagtggaagaa
aagcgcgacggaacagaaaccgagtgggtctttcccgaaaactgcccatcctgcggcacg
aagctagcgcctcaaaaagaaggcgatgctgactggcgttgcccgaatacccgaacctgt
ccggcacagctatcggcgcgcctggaatacctggcgggccgtggcgccttcgatattgag
gcgctgggtgaaaaaggtgctatcgacctcattgagcgcggcgtgctcgaagacgagtca
gatctctttgacctgaccgaggagcttttgaagaagtcggaggtctataccaccaaggct
ggcaacgtgaatgcctctggcaagaagctattgagcaatctcgaaaccgcgcgtcacaca
gacctctggcgtgtgctcgtggctttatccattcgccatgtcggccccacagccgctcgg
gcgattgcttcgcggtacggctcattggatgccgctcgctcggctgatgtggaagatatc
gcggaaaccgatggggtagggctagtcattgccgaaagcttcaaagactggtttgagatc
gattggcaccgcaccatcgtcgacaagtgggccgcagctggggtaaccatggctatcgat
gcttccgataaaccggagcagaccctagagggtctgaccatcgtggtcaccggcaccttg
gagaacttctctcgggatagcgcaaaggaagcgattatctcccgcggtggcaaggcttca
ggttcagtgtcgaaaaagaccgactttgtcgttgctggtgaaaacgctggttcgaaagaa
actaaggctcgcgatcttggcgtgacaatcctcaacgaaaacggatttgaaaccctgctg
gctactggctctggtcccgccgaatcagaagcaggagcagaggacgctgccaccgaggag
taa
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