Cobetia amphilecti: LCW13_01970
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Entry
LCW13_01970 CDS
T07922
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
camh
Cobetia amphilecti
Pathway
camh03030
DNA replication
camh03410
Base excision repair
camh03420
Nucleotide excision repair
camh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
camh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LCW13_01970 (ligA)
03410 Base excision repair
LCW13_01970 (ligA)
03420 Nucleotide excision repair
LCW13_01970 (ligA)
03430 Mismatch repair
LCW13_01970 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
camh03032
]
LCW13_01970 (ligA)
03400 DNA repair and recombination proteins [BR:
camh03400
]
LCW13_01970 (ligA)
Enzymes [BR:
camh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LCW13_01970 (ligA)
DNA replication proteins [BR:
camh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LCW13_01970 (ligA)
DNA repair and recombination proteins [BR:
camh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LCW13_01970 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LCW13_01970 (ligA)
MMR (mismatch excision repair)
DNA ligase
LCW13_01970 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LCW13_01970 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
5_3_exonuc
DUF7560
Big_3
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
UBU50362
LinkDB
All DBs
Position
431625..433739
Genome browser
AA seq
704 aa
AA seq
DB search
MEEVAQLHRELLEASHRYYVLDDPTLTDADYDTRLRRLEALEAKYPQLITSESPTQRVGA
APASGFEEVQHAVPMLSLNNAFDDDELRAFVQRAAKTLELGDAQDAGDELSFCCEPKLDG
LAVSLIYENGVLVQGVTRGDGRTGEGITTNLRTIRSIPLKLRGDDLPELLEVRGEVYMSH
AGFEALNARGRDEDGKVFANPRNAAAGSLRQLDSNIAASRPLEFCAYQVARVDDALLASE
AGQNHSGLMALLNDYGFRTSPQLEVVRGAQGIIDYTRRLGEQRDGLDHDIDGAVIKLDAL
RLQRELGFVARAPRWAIAYKYPAQEQETTLEGVDFQVGRTGALTPVARLAPVQVAGVVVS
NATLHNMDEVERLGVQIGDSVIIRRAGDVIPQVVRVASEGASREAIVLPDGCPVCGSEIE
RLEGEVVARCAGGLICAAQRKEALKHFSSRKALDVDGLGEKLIEQLIERELVKTPADLFH
LEAATLAELPRMGEKSAANLVASLDKSRNTTLARFIYALGIREVGEATAANLATHFGTLE
ALRAADQAALEAVEDVGPIVAAHIHTFFQQPTNNETLEALLACGLSWEEVEIGERPQPLA
GQTWVLTGSLDSMTRDEGKARLQALGAKVAGSVSKKTAGVVAGEAAGSKLEKAMQLGLTV
LDEETFVKRLAEWESGADAQQDNPQDSAQANVQDSAQDSAGEDA
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggtcgcgcagctgcatcgcgagctgcttgaggccagccaccgctattacgtg
ctggatgatccgacgctgaccgatgccgactacgacacgcgcctgcgtcgcctcgaggcg
ctggaagccaaatatccccagctgatcacctcggaatcgcccacccagcgtgtcggagcc
gcgccggccagcgggtttgaagaagtgcagcatgcggtgccgatgctgtcgctcaacaac
gccttcgatgacgatgagttgcgcgccttcgtgcaacgtgcggcgaaaacgctggagctg
ggagatgctcaggatgcgggtgacgagctgagcttctgctgcgagcccaagctcgatggc
ctggccgtgtcgctcatctacgagaatggcgtgctggtgcaaggcgtgacgcgcggcgat
ggccgcaccggcgaaggtatcaccaccaacctgcgcaccatccgctcgatcccgctcaag
ctgcggggtgatgatctgccggagctgctggaagtgcgcggcgaggtctacatgagccac
gctggcttcgaggcgctgaacgcgcgcggccgcgacgaggatggcaaggtgttcgccaac
ccgcgcaatgccgccgccggcagcctgcgccaactggattccaatatcgccgcctcgcgt
ccgctggaattctgcgcctatcaggtcgcgcgggtggacgatgcgctgctcgctagcgag
gccggtcagaatcattccggtctgatggcgctgctcaacgactatggcttccgcaccagc
ccgcagcttgaggtggtgcgcggtgctcagggcatcatcgactacacccgccgcctcggc
gagcagcgtgatggcctcgaccacgacatcgatggcgcggtcatcaagctcgatgcactg
cgtctgcagcgtgaactgggcttcgtggcgcgcgcgccgcgctgggccatcgcctacaag
tacccggcgcaggaacaggaaaccaccctggagggcgtcgattttcaggtcggacgcact
ggcgcgctgacgccggtcgcccgactggcaccggtgcaggtcgccggtgtggtggtctcc
aacgccacactgcacaacatggacgaggtggaacgtctcggcgtgcagatcggtgacagc
gtcatcattcggcgcgccggcgatgtcatcccacaggtggtgcgggtcgccagcgaaggc
gccagccgcgaagccatcgtgctgccggacggctgcccggtgtgtggctccgagatcgag
cgcctcgaaggcgaggtggtggcacgctgcgcgggcggactgatctgcgccgcgcagcgc
aaggaagccctcaagcacttctccagtcgcaaggcgctggatgtcgatggcctcggcgag
aagctgatcgagcagctgatcgagcgtgagctggtcaagacgccggcggacctgttccac
ctggaagctgccacgctcgccgagctgccgcgcatgggcgagaagtccgccgccaatctg
gtcgcctcgctggacaagagccgcaacaccaccctggcgcgtttcatctacgccctcggc
attcgggaagtcggtgaagccaccgccgcgaatctggccacgcacttcggcaccttggaa
gcgctgcgtgcagcggatcaggccgcgctggaggcagtggaagatgtcggccccatcgtc
gccgcgcatatccataccttcttccagcagccgaccaacaacgagacgctggaagcgttg
ctcgcctgtggcctgagctgggaagaggtcgagatcggtgagcgcccccagccgctggca
ggccagacctgggtgctgaccggcagcctcgacagcatgacgcgtgatgaaggcaaggcg
cgtctgcaggcgctgggcgccaaggtggcgggcagtgtctcgaagaagaccgccggtgtg
gtcgccggcgaggcagcgggcagcaagctcgagaaagccatgcagctgggcctcacggtg
ctggacgaagagaccttcgtgaagcgcctggccgaatgggaatccggtgctgatgcacag
caggacaatccgcaagacagtgcgcaagccaatgtgcaagacagtgcgcaggacagcgcg
ggagaggatgcatga
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integrated database retrieval system
