Caproicibacterium amylolyticum: H6X83_00105
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Entry
H6X83_00105 CDS
T07171
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
caml
Caproicibacterium amylolyticum
Pathway
caml03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
caml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H6X83_00105 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
caml03400
]
H6X83_00105 (mfd)
Enzymes [BR:
caml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H6X83_00105 (mfd)
DNA repair and recombination proteins [BR:
caml03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H6X83_00105 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
CarD_TRCF_RID
UvrB_inter
Helicase_C
Cas3-like_C_2
UB2H
T1R_D3-like
RecG_dom3_C
FerA
Motif
Other DBs
NCBI-ProteinID:
QNO18113
UniProt:
A0A7G9WHF1
LinkDB
All DBs
Position
20604..24119
Genome browser
AA seq
1171 aa
AA seq
DB search
MKFIANALSRLREYQSLLGAVQQNELPAALTGLSGIHKANMIYALWVHTGKRAFVIAGEE
SEANRMVSDLAAEGMRALYYPMRDLTLRKGEAASSHDYERQRLQVLARLQAGECDAVVCC
IDGALQYTVPPQVLRERTQRIASGDTLAPESVEILLLRCGYEHAVQVEGPGQFARRGGIL
DLFPPESSAPVRLEFWGDEVDTLSYFDPQTQRRTDACDSVCISPAAEALAEDTTALAERI
RKIASSLRGKNAPVSRPVLQEQADMLEQNIHLACMDKFLPILYENPACLLDYCSENDLLF
VSELVNVKEKMRTSQFHWNEDVKEYLADGTLCKHLDTYSFTWPDALSLFEKRGTVFLDTF
ARGSYEIPTKLLLNFSARQLSVWGGSTQLLAEDLSAMLHNKWACAVLAGNERSARTTVAD
LQAAGIGAFYAEDAEEIARGAVAVLPGSLTAGAEWPGSFFGLITHGKLLQSGKHRKSKRG
KNSRPVSSLAELEPGDYVVHESHGIGIYEGIHKLDTHGIVKDYIKIQYAKGDTLYVPVTQ
LDLVSRYIGPREDANVRLHKLGGTEWQKTKNHVKHAVQDMAKELIKLYAARMHAKGHAFS
ADNEMQRDFESRFEFDETDDQLRCIEEIKADMEREAPMDRLLCGDVGFGKTEVALRAGFK
CICDSKQCALLVPTTILAWQHYQTVLRRMEGFPVKIELLSRFRTPKQQEEIIKRLKRGEV
DMVIGTHRLVSKDVRFRDLGLVVIDEEQRFGVAQKEKLKNLCTNVDVLTLSATPIPRTLN
MAMSGIRDMSVLEEAPHDRHPVQTYVIEHDEGILADAVRRELRRGGQVYWLHNDVASITQ
AAGRLKARVPEARIGIGHGKMSEQELSEVWRQLIDHEIDVLVCTTIIETGVDVPNANTLI
IDNADRLGLSQLHQIRGRVGRSTRRAYAYFTFTPNKVLSEIAQKRLAAIREFTEFGSGFK
IAMRDLEIRGAGNILGGEQHGHMEAVGYDMYLKLLGDAIAAEKGVAPQQGEECLMDLQLQ
AHIPENYISDGNSRIEMYRRIADIRSDEDALDVTDELIDRYGDPPKSVEGLIQIALLRNM
AGLCGLTEVKQQQGQLILYQEKLNMKWISRLTALYPQRVLVNAGGRPYISLHLQPGEDVL
ALLKELLQTGQKQGGSTAAGGRKEMDKSSSV
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttatcgcaaatgcactttcgcgcctgcgggaataccagtctttgcttggtgcg
gtacaacagaatgaactgcccgcagcgctgacggggctttccggtatccacaaggccaat
atgatctatgccctgtgggtgcacaccggcaaacgtgcttttgtcattgccggcgaggag
tcggaagccaaccgcatggtcagcgaccttgccgccgaaggaatgcgtgcactttactac
cccatgcgcgacctgacgctgcgcaagggcgaagccgcttcctcccatgattatgagcgg
cagcgactgcaggtattggcgcggctgcaggccggcgaatgtgacgcggtggtttgctgt
attgacggtgctttgcagtatacggtgccgccgcaagtactgcgtgaacgcacacagcgg
attgcttccggcgatacactggcaccggaaagtgtggaaattctgctgctgcgctgtggg
tatgaacatgctgtgcaggtagagggccccggtcagtttgcgcgccgcggcggaattctg
gatttatttccgccggagagcagtgctccggtccgcttggaattctggggcgatgaagtg
gacaccctttcttactttgacccgcagacacagcggcgcacggatgcctgtgacagcgtg
tgtatctcccccgctgcggaagcgctggcggaggacaccacagcccttgcggagcgtatc
cgcaaaatagcttcctccctgcgcggcaaaaacgcgccggtttcgcgccctgttttacag
gaacaggcggatatgctggagcaaaacattcatcttgcatgtatggacaaatttctgccg
atcctttatgagaatcctgcctgtctgctggactactgctctgaaaacgacctgctgttt
gtcagtgagcttgtcaacgtcaaggaaaaaatgcgcacttcgcagttccactggaatgag
gatgttaaagagtaccttgcggatggcaccctctgcaagcatctggacacctacagcttc
acgtggccggacgcgctttcgctttttgaaaagcgcggcaccgtctttctggacaccttt
gcgcgcggcagctatgaaatcccaactaaactgctgctgaatttttctgcgcggcagctt
tccgtctggggcggttccactcagcttttggcagaggatctttccgcaatgctgcacaac
aagtgggcgtgcgcggtgctggcgggcaatgaacgcagtgcccgcacaaccgttgcggat
ttacaggcagcgggaatcggtgctttttacgcggaagatgcggaagaaattgcacgcggt
gcagtggcggtgctgcccggttccctgacagcgggtgcggagtggccgggctcctttttc
ggcctgattacccacggcaagctgctgcagagcggcaagcaccgcaagtccaagcgcggt
aaaaacagccggccggtcagttcccttgcggaactggagccgggcgattatgtggtgcac
gaaagccacggcatcggcatctatgagggaatccacaagctggacactcacggtatcgta
aaggactatattaaaattcagtatgccaaaggtgacacactatatgtgccggtcacacag
ctggatttggtcagccgctacatcggtccgcgggaagacgcaaatgtccgcctgcacaag
ctgggcggcaccgagtggcagaaaacaaaaaaccacgtcaaacatgccgtgcaggatatg
gcaaaggagcttatcaagctgtacgccgcgcggatgcacgccaaaggacacgccttttcg
gcggacaatgaaatgcagcgcgactttgaaagccgcttcgagtttgatgaaacagatgat
cagctgcgctgcatagaagaaatcaaggcagatatggagcgggaagcccctatggaccgc
ctgctgtgcggcgacgttggttttggcaaaacagaagttgccctgcgcgccggttttaag
tgtatatgtgacagcaaacagtgtgcgctgctggtgccgactaccattctggcatggcag
cattaccagacggtgctgcgccgtatggagggtttcccggtcaaaatcgagctgctttcc
cgtttccgtacaccgaagcagcaggaggaaatcatcaagcggctcaagcgcggcgaagta
gatatggtcattggcacacaccgcttggtcagcaaagacgtaaggttccgcgaccttggt
ctggtcgttattgacgaggagcagcgctttggtgtagcacaaaaggaaaaattaaaaaat
ctgtgtaccaatgtggatgtgctgacgctgtcggcaacgccgattccccggacgctcaac
atggcaatgtccggtatccgcgatatgagtgtgttggaggaagcgccgcatgaccgtcac
cccgtgcagacttatgtcattgagcacgacgagggcattttagcggacgcggttcggcgg
gaactgcgccgcggcgggcaggtctattggctgcacaatgatgtcgcctccattacccaa
gcagccgggcgcctgaaagcccgtgtgccggaggcacgcattggtatcggtcacggaaaa
atgagcgaacaggagctttccgaagtctggcggcagctgattgaccacgagattgacgtg
ctggtgtgtaccaccatcatcgaaaccggtgtggatgtgccgaatgccaatacgctgatt
atcgacaacgccgaccggctggggctttcccagctgcaccagatacgcgggcgcgtgggg
cgcagtacgcggcgtgcctatgcgtactttacgtttacaccgaacaaggtgctttcggaa
attgcgcagaagcgtcttgccgctatccgggagtttaccgagttcggttccggcttcaag
attgccatgcgtgatttggaaatccgcggtgcgggcaatattcttggcggagaacagcac
ggtcatatggaggcagttggctatgatatgtacctgaaactgctgggtgatgcgattgcc
gccgaaaaaggcgtggcgccgcagcagggtgaagaatgcctgatggacctgcagctgcag
gcacatatccccgaaaactatatcagtgatggcaacagccgcattgagatgtaccgccgc
attgcagatattcgcagcgacgaagatgcattggatgttacagatgaactaatcgaccgc
tacggtgacccgccaaaaagtgtggaggggcttatccagatcgcgcttctgcgaaacatg
gcgggtctgtgcggcctgacagaagtaaaacagcagcagggacagctgatactgtaccag
gagaagctgaacatgaagtggatttcccgccttacggcgctgtatccacagcgtgtgctg
gtcaacgccggcggccgcccctacatcagtctgcacctgcagccgggagaagatgtgctg
gctttgctcaaagagcttttgcagaccggccagaaacagggcggcagtaccgccgccggc
ggtcgaaaagaaatggacaaatcttcatctgtgtag
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