Caproicibacterium amylolyticum: H6X83_08090
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Entry
H6X83_08090 CDS
T07171
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
caml
Caproicibacterium amylolyticum
Pathway
caml03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
caml00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H6X83_08090 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caml03021
]
H6X83_08090 (rpoC)
03400 DNA repair and recombination proteins [BR:
caml03400
]
H6X83_08090 (rpoC)
Enzymes [BR:
caml01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H6X83_08090 (rpoC)
Transcription machinery [BR:
caml03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H6X83_08090 (rpoC)
DNA repair and recombination proteins [BR:
caml03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H6X83_08090 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QNO16927
UniProt:
A0A7G9WE15
LinkDB
All DBs
Position
complement(1691753..1695307)
Genome browser
AA seq
1184 aa
AA seq
DB search
MEFNTLESIKIGLASPEKIREWSHGEVKKPETINYRTLKPERDGLFCERIFGPTKDWECH
CGKYKRIRYKGKICDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDIS
PRMLEKVLYFASYIVTDPGDVRELQKKQLLTEKEYRDLREKYEDDFQAGMGAEAIKKLLE
EIDLEKESKELKAELENATGQKRVRILKRLEVMEAFRQSGNRPEWMILDAVPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLARLLELHAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPNNRPLKSLSDLLKGKQGRFRQNLLGKRVDYSGRSVIAVGPELKMYQCGLPKE
MALELFKPFVMKRLVETGTEGNIKAARKAVERAKPEVWDALEIVIKNHPVLLNRAPTLHR
LGIQAFEPVLVEGRAMKLHPLACTAYNADFDGDQMAVHVPLSSEAQAEARFLMLAAGNLL
KPSDGKPVTVPTQDMILGSYWLTLDRDGEKGEGKIFKDVDEAIMAYDAKAIEIHAKIKVR
RRLEINGEMRESLVDTTVGQIIFNRPIPQDLGFIDRSKPENLFKFEIDFLVGKKQLGKII
EKCIKTHGTARTSEVLDSIKAQGYKYSALSGITVAVCDATIPPQKKEILQKTEERVDMIS
DQYKNGFLSDAERHMAVISTWNKATDEVSDALQKNLDRYNPIFMMADSGARGSMSQIRQL
AGMRGLIANTSGETIEVPIRANYREGLNILEYFISSRGARKGLTDTALRTADSGYLTRRL
VDVSQDVIIREDDCGATSGLEIYDIKEGNEVIESLHERLVGRFLVEDFVDEETGEVLVSK
DKMMTDADADIIVGRGVERIMIRSILGCRSKHGVCKKCYGLNLATGTEVTVGEAVGIVAA
QSIGEPGTQLTMRNFHTGGIANAEDITQGLPRVEELFEGRKPKHLAIISEIPGKVTFEEI
KKNRHVVVTGDDGQSKSYLIPFGSRVTVQEGQRIKAGTRITEGSVNPHDVLAISGVEAVQ
DYLIEEVQRVYRLQGVDINDKHIEVIVRQMMKKVRVEEAGDTDLLPSSMVEKLEFEAVNQ
QIRDRIAAGESNLREATCTPTLLGITKASLATDSFLSAASFQETTRVLTDAAIKGKVDPL
MGLKENVIIGKLIPAGTGMKHYANVQLEKTSSEKGEEGLTNTAV
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atggaatttaacacactggaatcaatcaaaattggccttgcttctcccgaaaagatccgc
gaatggtcccatggcgaagtgaaaaagccggaaaccattaactaccgtacgctgaagccg
gaacgtgacggcttgttctgcgaacgcatttttgggcctactaaggactgggaatgccac
tgcggcaagtacaagcgtatccgctataagggcaaaatctgcgaccgctgcggtgttgaa
gttacccgcgctaaggttcgccgtgagcgtatgggtcacattgagctggccgctccggtg
tcgcatatctggtactttaaaggtattccgtcccgcatgggattgatcctggatatttca
ccgcgtatgctggaaaaggttctgtactttgcaagttatattgtaacagaccccggcgat
gtgcgtgaactgcagaaaaaacagcttctgactgaaaaggaataccgcgatctgcgtgaa
aagtatgaagatgattttcaggcaggtatgggtgcggaagctattaaaaaactgttggaa
gaaatcgacttggaaaaggagtccaaggagctgaaagctgaattggaaaacgcgaccggt
cagaagcgtgtgcgtattctaaaacggcttgaagttatggaggcattccgccagtccggc
aatcgcccggagtggatgattcttgacgctgttccggtcattccgccggacttgcgtcct
atggtacagctggacggcggtcgttttgcgacttccgacctgaatgatctgtaccgccgt
gttatcaaccgcaacaaccgccttgcgcgtttgctggaactgcatgcaccggatattatt
gtgcgcaacgagaagcgcatgctgcaggaagcagtggatgcgctgattgacaatggccgc
cgcggcagaccggtcaccggtccgaacaaccgcccgctgaagtctttgtctgacctgctt
aagggcaagcagggacgtttccgccagaacctgctgggcaagcgtgttgactactccggc
cgttccgttattgcggttggtccggaactgaaaatgtatcagtgcggcctgccaaaggaa
atggcactggaactgttcaaaccgtttgtcatgaagcgcttagtggaaaccggaacagag
ggaaacatcaaagctgcccgtaaagcggttgagcgcgcgaagccggaagtttgggatgcg
ctggaaattgtaatcaaaaatcatccggttctgctaaaccgtgcacctacactgcatcgt
ctgggcattcaggcttttgaacctgtactggttgaaggccgtgccatgaagctgcatcca
ctggcctgtacggcatacaatgcggactttgacggcgatcagatggctgttcatgtgccg
ctttccagtgaggcacaggcggaagcacgcttcctgatgctggcagccggcaacctgctg
aagccttctgacggcaagccggttacggttcctacacaggatatgatcctgggctcttac
tggctgacgcttgaccgtgacggcgaaaagggcgagggtaagattttcaaggatgtcgat
gaagcgattatggcatatgatgccaaggccatcgagattcatgcaaaaatcaaagttcgc
cgccgcctcgagattaatggggaaatgcgcgaatcactggtggataccacggttggtcag
attatctttaaccgcccgattccacaggatttgggctttattgaccgctctaagcccgaa
aatctctttaagtttgagattgacttcttggttggcaagaagcagttgggcaagatcatt
gaaaagtgcataaagacccacggcactgcaagaaccagtgaagttctggacagcattaag
gcacagggttacaagtactctgccttgtctggcattacggttgctgtttgtgatgcaaca
attccaccgcagaagaaagagattctgcagaaaacagaagagcgcgtggatatgatttcg
gatcagtacaaaaacggttttctctctgatgcagaacgtcatatggcggttatcagcaca
tggaacaaagcaaccgatgaagtatctgacgccctgcagaagaaccttgaccgctacaat
cctattttcatgatggcagattccggtgctcgtggttctatgagtcagattcgtcagctg
gccggtatgcgtggactgattgcaaatacctccggtgaaaccattgaagtcccgattcgc
gcgaactaccgtgaaggtctgaacattttggaatacttcatttcttcccgtggtgcccgt
aaaggtttgaccgatactgctctgcgtactgctgactctggttacctgacccgccgcttg
gttgatgtttctcaggatgttattattcgtgaggatgactgcggcgctactagcggcctt
gaaatttatgatatcaaggaaggcaatgaagtcattgaatccctgcatgaacgtctggtt
ggccgcttcctggtggaagattttgttgacgaagaaactggcgaagtgctagtcagcaag
gacaaaatgatgacggatgcagatgcggacattattgttggccgcggtgtagaacgtatt
atgattcgttctattttaggttgtcgttctaagcacggtgtctgcaagaaatgctatggt
ctaaaccttgcgaccggcacggaagtgaccgttggtgaagctgttggtattgttgcggca
cagtccatcggcgaacctggcacacagctgaccatgcgtaacttccataccggcggtatt
gcaaacgccgaagatattacacagggtcttccgcgtgttgaagaactgtttgagggacgc
aaaccaaagcatcttgcaattatcagtgagattcctggcaaagttacgtttgaagaaatc
aagaagaaccgccatgttgtggtcacaggcgatgatgggcagtctaagagctacctgatt
ccgtttggttctcgcgttacagtgcaggaaggacagcgtatcaaggccggcacccggatt
acagaaggttctgtgaatccgcatgatgttcttgctatcagcggtgttgaagcggtgcag
gattatctgattgaagaagtgcagcgcgtttaccgtttgcagggcgttgatatcaacgat
aagcacatcgaagttattgtgcgtcagatgatgaagaaagtacgtgttgaggaagccggc
gataccgatcttcttcctagctccatggtggagaagctggaattcgaagctgtcaaccag
cagattcgcgaccgtattgctgcgggtgagtccaatctgcgggaagcaacctgcacgccc
accctgctcggtattacaaaggcttctttggcaactgattccttcctttctgccgcttct
ttccaggaaacaacgcgtgtgttgaccgacgctgccatcaagggcaaggttgacccgctc
atgggtctgaaggaaaacgtcattatcggcaagctgattcctgccggtacaggcatgaag
cactatgcaaatgtgcagcttgaaaagacttcttctgaaaaaggagaagagggcttgaca
aatacagcagtatag
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