Entry |
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Name |
(GenBank) DEAD/DEAH box helicase
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KO |
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Organism |
caml Caproicibacterium amylolyticum
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Pathway |
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Brite |
KEGG Orthology (KO) [BR:caml00001]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H6X83_10630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:caml03019]
H6X83_10630
Enzymes [BR:caml01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H6X83_10630
Messenger RNA biogenesis [BR:caml03019]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H6X83_10630
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SSDB |
|
Motif |
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Other DBs |
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LinkDB |
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Position |
complement(2223738..2225285)
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AA seq |
515 aa
MDFQSLQIMQPILKNLEREGYKTPTPIQQQAIPQVLLGRDLFGCAQTGTGKTAAFAVPIL
QHLEENRVSGRPIRALILTPTRELAIQIFDNFRTYGKGLHQTCCVIFGGVSQNGQVQNLQ
RGTDVLVATPGRLNDLIGQGYIDLSQLEIFVLDEADRMLDMGFIHDVKKVIAQLPQQRQN
LMFSATLPKEIRALVDSILQNPVKISVTPPATTVEAIDQSVYYVDKGNKCRLLVWVLKDP
RISSALVFTRTKHGADRVVRDLTHAGISAAAIHGDKTQNARQAALSKFKNHQIRVLVATD
IAARGIDIDELSHVINYDIPEVPETYVHRIGRTARAGHSGTALSFCSINEKADFMGILRL
IKKEVPEVDEHPYPMQELVPMTREEMHQKQLERQQSARAARERRQQKETTGKSRRPERKQ
NAAAKKNEPAQQRQKAQAKKRPAQKANQSPRTEKPAQQPPQKQQPKAPRVKTGKEGRVPA
ERHESKHHEVRPELEKYLPKPLRKRPTDQPLKHHL |
NT seq |
1548 nt +upstreamnt +downstreamnt
atggattttcaatcattacaaattatgcagccgattcttaaaaatctggagcgcgagggt
tacaaaacacccacaccgattcagcagcaggcaattccacaggtgctgctgggacgcgac
ttgttcggatgtgcgcagaccggaacaggaaaaacagctgcatttgcagtgccgattctg
cagcatttggaggaaaaccgggtcagcgggcgccccattcgtgcgctgatcctgaccccg
acccgcgaattggcaattcagatttttgacaatttccggacctacggcaaagggctgcac
cagacctgctgcgtcattttcggaggtgtcagccagaacggtcaggtgcagaacttgcag
cgcggtacggatgtgctggttgcgacaccggggcggcttaatgacctgattgggcagggc
tatattgacctttcgcagcttgaaatttttgtgctggatgaagcggaccgtatgctggac
atgggctttatccatgatgtaaaaaaggtgattgcccagctgccgcagcagcgtcagaac
ctgatgttcagcgcaactttgccaaaggaaattcgtgcacttgtggacagtattctgcag
aatcctgtgaaaatcagtgtaactcctccggcaacaacggttgaagccatcgaccaaagt
gtgtattatgtagataagggcaacaaatgccggctgctcgtctgggtgctcaaagacccg
cgcatttcctcggcgctggtgtttacacgtaccaagcacggtgctgaccgtgtcgtgcgt
gatttgacgcacgccggtatctccgccgctgccattcacggtgacaagacacagaatgca
cggcaggcggcactttccaagtttaagaatcatcagattcgggtgctggtcgctaccgat
attgccgcacgcggtatcgacattgatgaactttcccacgtaatcaactatgatattccg
gaagtgccggaaacgtatgtgcatcgcattggccgtaccgcgcgcgccggtcacagcgga
acggcgctttctttctgcagtattaatgaaaaagcggattttatgggaattttaaggctg
attaaaaaggaagtcccggaagtcgacgagcatccgtacccaatgcaggaactggtgcct
atgacgagagaagagatgcaccagaaacagctggagcgtcagcagtctgcaagggccgcc
agagaacgccgccagcagaaagaaacgacaggcaaaagccgccgtccggaaagaaagcag
aacgccgcagctaagaaaaacgagcccgcccagcagcgccaaaaagcacaggcgaaaaaa
cgccccgcgcagaaagcaaatcagagcccgcgtacagaaaaaccggcgcagcagccgccg
cagaaacagcagccgaaggcaccgcgtgtaaaaaccggaaaagaagggcgtgttcccgcc
gaaagacatgaatcgaagcaccatgaggtgcgtccggaactggaaaagtatctgccgaag
ccgctacgcaaacgtccgaccgaccagccgctgaaacaccatctgtaa |