Campylobacter fetus subsp. testudinum 03-427: CFT03427_1089
Help
Entry
CFT03427_1089 CDS
T02899
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
camp
Campylobacter fetus subsp. testudinum 03-427
Pathway
camp03030
DNA replication
camp03410
Base excision repair
camp03420
Nucleotide excision repair
camp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
camp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CFT03427_1089 (ligA)
03410 Base excision repair
CFT03427_1089 (ligA)
03420 Nucleotide excision repair
CFT03427_1089 (ligA)
03430 Mismatch repair
CFT03427_1089 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
camp03032
]
CFT03427_1089 (ligA)
03400 DNA repair and recombination proteins [BR:
camp03400
]
CFT03427_1089 (ligA)
Enzymes [BR:
camp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CFT03427_1089 (ligA)
DNA replication proteins [BR:
camp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CFT03427_1089 (ligA)
DNA repair and recombination proteins [BR:
camp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CFT03427_1089 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CFT03427_1089 (ligA)
MMR (mismatch excision repair)
DNA ligase
CFT03427_1089 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CFT03427_1089 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
BRCT_2
Nlig-Ia
DNA_ligase_ZBD
PDZ_1
Motif
Other DBs
NCBI-ProteinID:
AGZ81948
LinkDB
All DBs
Position
complement(1110317..1112254)
Genome browser
AA seq
645 aa
AA seq
DB search
MDKNDYLKAVDRLNLWAKAYYTDDSPIASDDEYDKLYNAVVQFEKENPDLKLSYSPTNRI
GGEVLDEFKKISHIAKMWSMEDIFSDSELVAWILRGDKTDCEFFAEPKFDGASLNLLYEN
GNLISAATRGDGSVGEDVTNNAKVISSVPLQIDYKDKIEIRGEVVISKDDFELINSERSK
NSEPPLANPRNAAAGSLRQLDNSIVKQRKLKFYPWGVGENSLKFNKHSQIMDFVRSLGFL
RDDFCKVIKGIDELKIAYKELLSARELKPILMDGMVIRVNDLSKANQLGYTVKFPKFMVA
YKFPATEKTAKLIDILLQVGRTGVVTPVGLLDGVLIDGAFVKNVTLHNFDEIDRLNLMKN
DFVTVIRSGDVIPKITGVFKDRRDGTQSEIIRPKICPECGNELLDEGVFIKCQNLTCKAR
VVSSIIYFASKKCMNIDGLGDAIVELLYQKNIIKDIADIYRLDELSFIGLEGFKTKKISN
LLLAIDNSKTPNLDKFITSLGIEHIGEVAAKKIAKNYGDKWLELTIEELLSLDGFGEAMA
LSYLEFMRVNLEKIKELLEFITPKIQNLELKTNIFSGKTVVITGTLSRSRDEFKAQLESY
GATISNSVSKKTDFVLYGNEAGSKLEKANKLGVRTIDESEYESLK
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atggataaaaatgattatttaaaagcggtcgataggctgaatttatgggcaaaggcttat
tataccgatgattctccgatagcatcagatgatgagtatgacaagctttataacgctgta
gttcagtttgaaaaagaaaatccggatttaaaactctcttactctcctacaaatagaatc
ggcggagaagttttagatgagtttaaaaagatatctcatatcgcaaaaatgtggtctatg
gaagatatatttagcgatagtgagcttgttgcttggattttaagaggagataaaacagat
tgcgagttttttgctgaacctaaatttgatggcgctagtttaaatttgctttatgaaaac
ggaaatcttataagtgctgctacaagaggcgatggaagcgtcggagaagatgttacgaac
aacgcaaaagttataagctcagtgccgttgcaaatagactataaagacaaaatagaaata
agaggcgaagtcgtaatatcaaaagatgattttgaactgataaatagtgagcgtagcaaa
aactcagaaccgcctttagcaaatccaagaaacgcagcagcaggaagtcttaggcagctt
gataatagtatagttaagcaaagaaaacttaagttttatccgtggggagttggagagaac
tctttgaaatttaataagcattcgcagattatggattttgtgaggagtcttggtttttta
cgtgatgatttttgtaaagttatcaaaggtatcgatgagttaaaaattgcttataaagag
cttttaagcgcaagagagcttaagcctattttgatggatggaatggtgatacgagtaaat
gatctatcaaaagctaatcagcttggttatactgttaaatttccaaaatttatggtagct
tataaatttcctgctactgaaaagactgcaaaactgatagatatcttgctacaagtagga
agaacaggagtcgtaactccagtagggttgcttgatggagttttgatagatggtgcattt
gtaaaaaatgttacgcttcataatttcgatgagatagatagactaaatttgatgaaaaac
gactttgtcaccgtgataagaagtggagatgttatacctaagatcactggagtatttaaa
gatagaagagacggaactcaaagcgagataatccgccccaaaatttgcccagaatgcgga
aatgaacttttggatgaaggcgtttttataaagtgtcaaaatctaacttgtaaagctaga
gttgtgagttctattatctattttgcatctaaaaaatgtatgaatatagatggtcttggc
gatgctatagtagagcttttatatcaaaaaaatattattaaagatatcgctgatatttat
aggcttgatgagcttagttttataggtcttgagggatttaaaactaaaaaaatctcaaat
ttgctattagctatagataactctaaaactccaaatttagataaatttataacttctttg
ggtatcgagcatatcggtgaagttgcggctaaaaaaatagcaaagaattacggagataag
tggcttgagctaactattgaagagcttttatctttagatggatttggtgaagctatggct
cttagttatcttgagtttatgagagtaaatttagaaaagataaaagaacttttagagttc
atcactccaaaaatacaaaatttagagctaaaaacaaatatattttcaggaaaaactgta
gtcataacaggcactctttcgcgctccagagatgagttcaaagctcagttagaaagctat
ggcgctacaatatctaactccgtgtctaaaaaaacggattttgtattatatggaaatgaa
gctggaagtaagctagaaaaagcaaataaattaggcgtaagaacgatagatgagagtgag
tatgaaagtttaaaatga
DBGET
integrated database retrieval system
