Cyclobacterium amurskyense: CA2015_4295
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Entry
CA2015_4295 CDS
T03993
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
camu
Cyclobacterium amurskyense
Pathway
camu03030
DNA replication
camu03410
Base excision repair
camu03420
Nucleotide excision repair
camu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
camu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CA2015_4295
03410 Base excision repair
CA2015_4295
03420 Nucleotide excision repair
CA2015_4295
03430 Mismatch repair
CA2015_4295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
camu03032
]
CA2015_4295
03400 DNA repair and recombination proteins [BR:
camu03400
]
CA2015_4295
Enzymes [BR:
camu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CA2015_4295
DNA replication proteins [BR:
camu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CA2015_4295
DNA repair and recombination proteins [BR:
camu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CA2015_4295
NER (nucleotide excision repair)
GGR (global genome repair) factors
CA2015_4295
MMR (mismatch excision repair)
DNA ligase
CA2015_4295
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CA2015_4295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
HHH
LicP_NPro
PTCB-BRCT
Auto_anti-p27
UPF0758_N
5_3_exonuc
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
AKP53640
UniProt:
A0A0H4PKS6
LinkDB
All DBs
Position
5319729..5322206
Genome browser
AA seq
825 aa
AA seq
DB search
MNKVNKKEAGKLIDELTREINHYNHLYYQEDKSEISDFDFDQLLDKLIQLENEYPDLKKE
DSPTQRVGGTITKNFETAEHSVRMLSLGNTYSKEELIAFDERVAKGLEHRNYNYLCELKF
DGVAISLVYENGVLTRAVTRGDGYKGDVVTENVKTIRTIPLVIKDQENLPSYFEARGEIF
LSKQGFEKINAERLESGESLLANPRNTASGTLKMQDSSVVAKRRLNCYLYQLIADDYGII
EHGESLQLLENWGFNVSPTYKQCQNLDEVLAYIEYWREKRHHLSVETDGVVIKVNDYRQQ
EELGFTAKIPKWAIAFKYQAESAESTLLSIQYQVGRTGAITPVANLSPVSLAGTTVKRAS
LHNANEIERLDLHEGDTVNVEKGGEIIPKITGVVLERRISGSKPIVYIKHCPECGTLLER
NEGEAKHFCPNDEACPPQVLGRIEHFVSKRAMNIDSLGTERLRALIQQGYVQDLADLYYL
PEKKGELLGLEVSDDQYSKNSDGYLYVSLKKALYAISQHLTLKEIDSFIDTHENYSLHEK
VSEFINFVKNTGKKAKSNLDSIKKLDALLDKGEFDLVEDFVPVAYILYILTGNENSLAEF
TGKTKNKNSVHEIVINDTVDLFGGAMDQINKLKGSTFQEGVIKNMLDGIAQSTSQPFPKV
LFGLGIRNIGENTAILLAKHFQNIENLEKASAEELLEINGVGETLVQSIGLFFSKEKNRM
IIDKLKAKGLQFQLSEKETQLESTILEGKKILASGRLNHFKRDEIMDFVASHGGTYSKSV
SKNLDFIIEGEEMGPSKKEKARKLNIPLISEESFLEMCGKNKEIK
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagtaaataaaaaagaggcagggaagttaatcgatgagttgacgagagagatc
aatcattacaatcacctttattaccaggaggacaaatccgaaattagtgattttgatttt
gatcagttacttgataagctcattcaattggagaatgagtatcctgatttaaaaaaagag
gacagccctacccaaagggttggtggcaccatcacaaaaaactttgagacggcggaacat
tctgtacgcatgctttcattgggcaatacctattccaaagaagaattaatagcctttgac
gaaagggtagccaaaggacttgaacatagaaattacaactatttatgtgaattgaaattt
gatggtgtagccatcagtttggtttatgaaaatggagtattaacaagagcagtcacgcgg
ggagatggatacaaaggagatgtagtgactgaaaatgtcaaaaccattagaaccatacct
ttggtcatcaaagaccaagaaaatcttcctagctattttgaagccaggggtgaaatattt
ctctccaagcagggctttgagaaaatcaacgctgaaaggcttgaaagtggggaaagttta
ctggccaaccctagaaacactgcatctggaaccctcaaaatgcaagattcatccgtagtt
gccaaaagaaggctgaattgttatctataccaattgatagcagatgactatggcattata
gagcatggagaatcgctacaacttttggaaaattggggattcaatgtatctcctacttac
aaacaatgccaaaatcttgatgaggttttggcatatatcgaatattggagagaaaagcga
caccatctttcagtagagactgatggcgtggtaattaaggtaaatgattaccggcagcaa
gaggaattgggctttaccgcgaaaattccaaaatgggccattgcctttaaataccaggca
gaaagtgctgaatccacccttttgtctattcaatatcaggtgggtagaacaggtgcaatc
acgcctgtagcgaatttatcccctgtttcactggcaggaactactgtaaaaagagcatcc
ctacacaatgccaatgaaattgaaaggctggaccttcatgagggtgatacagtaaatgta
gaaaaaggaggagagatcattccaaaaatcactggggtagtgttggaaagaagaatttca
ggaagcaaacccattgtatatatcaagcattgtccagaatgcggtaccttgttggaaaga
aatgagggtgaggcgaaacacttctgtccaaatgacgaagcctgccctcctcaggtttta
gggagaattgagcactttgtatcaaaaagagccatgaatattgactcgctagggaccgaa
aggctcagggcattgatccaacagggctatgtacaggatctggcagacctttattatttg
cctgagaaaaaaggagaattgttggggctagaggtatccgatgatcaatattccaaaaac
agtgatgggtatttgtatgtaagcttgaaaaaggcattgtatgccataagccaacatttg
accttgaaggaaattgattcctttattgatacgcatgagaattatagtttgcatgaaaag
gtttcagaatttataaattttgtaaaaaatacaggtaaaaaagccaaaagcaatctggat
tcaatcaaaaagctagatgcactgctagataaaggagaatttgatttagtggaagatttt
gtacctgtcgcctatattctatatattttaactggaaatgaaaatagccttgcagaattt
acaggcaaaacaaagaataaaaatagtgttcacgaaatagtaatcaatgatacggttgat
ttatttggtggggctatggatcaaattaataaactaaaaggaagtacttttcaggaaggt
gtgataaaaaatatgctggatgggatcgcccaatcgacttcccaaccctttccaaaagta
ttatttggattaggtatcaggaatattggtgaaaatacggctatattgttggccaaacac
ttccaaaatatagagaacctagaaaaggcaagtgcagaagaattacttgaaatcaatggt
gtaggtgagactttagtgcaaagtataggattgtttttctccaaagagaaaaacagaatg
atcatagataaactaaaagcaaagggcctacaatttcaactttcagaaaaggagactcag
ttagaaagtaccattttggaaggtaaaaaaattcttgcttcaggtcgattaaatcatttt
aagagagatgagatcatggattttgtagcatctcatgggggtacttattccaagtctgtt
tctaaaaaccttgatttcataatcgaaggagaagaaatggggcctagtaaaaaggaaaaa
gcccgaaaactaaatattccattgatttcagaggaatcttttttagaaatgtgtggtaaa
aacaaagaaataaaataa
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