Campylobacter porcelli: CSUIS_0924
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Entry
CSUIS_0924 CDS
T05900
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
camy
Campylobacter porcelli
Pathway
camy03030
DNA replication
camy03410
Base excision repair
camy03420
Nucleotide excision repair
camy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
camy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CSUIS_0924 (ligA)
03410 Base excision repair
CSUIS_0924 (ligA)
03420 Nucleotide excision repair
CSUIS_0924 (ligA)
03430 Mismatch repair
CSUIS_0924 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
camy03032
]
CSUIS_0924 (ligA)
03400 DNA repair and recombination proteins [BR:
camy03400
]
CSUIS_0924 (ligA)
Enzymes [BR:
camy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CSUIS_0924 (ligA)
DNA replication proteins [BR:
camy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CSUIS_0924 (ligA)
DNA repair and recombination proteins [BR:
camy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CSUIS_0924 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CSUIS_0924 (ligA)
MMR (mismatch excision repair)
DNA ligase
CSUIS_0924 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CSUIS_0924 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
HHH_5
BRCT_2
Nlig-Ia
DNA_ligase_ZBD
Zn_ribbon_PF0610
Motif
Other DBs
NCBI-ProteinID:
ARR00737
UniProt:
A0A1X9SWU4
LinkDB
All DBs
Position
complement(909030..910976)
Genome browser
AA seq
648 aa
AA seq
DB search
MNQKEYLEAVDTLNIWAKAYYTDDIPIASDDEYDALYHKVVKFEKENPSLKVLFSPTNRI
GGEILDQFEKLAHKARMWSMEDIFSDDELLAWIERGDKGSQRFFVEPKFDGASLNLTYEN
GILKSAATRGDGEIGEDVTNNAKVISSIPLKIPYDGFIEIRGEVVIAKKDFEEINAKRIQ
DGLNLLANPRNAAAGSLRQLDPSITKSRRLKFYPWGVGANELKFATHSQMMEFVRSLGFL
RDDFIRVCNSVDEVKNAYSKLLLLRDEKPIMMDGMVVRIDSLAKCDELGFTVKFPKFMVA
YKFPATQKSAKLLDIALQVGRTGVVTPVGILDGVEIDGAFVRNVTLHNFDEIERLGLMKG
DMVCVIRSGDVIPKITDVYKSRRDGTQSNIERPTNCPKCGSELLDEGVFIKCQNLSCKAR
VVSSIIYFASKKCMNIDGLGDAIIELLYENGKISSIIDIYRLDRGSFNGLEGFKDKKIDN
ILNAINISKTPPLHRFITSLGIEHIGEVAAKKIASTYPNNWLNLNQDELLSLDGFGEAMA
LSYLEFMRVNYDKIIELMEFVKPKIEDIKFTQNIFSGKTIVITGTLSRPRDEIKKELESF
GAKVSSSVSSKSDYLLSGESSGSKYDKAISLGVKIIDEKEYERLINEG
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaaaaagagtatttagaagcggttgatacgctaaatatatgggcaaaggcttat
tataccgatgatataccaatagcaagcgatgatgagtatgatgctttatatcataaggtt
gttaaatttgagaaagaaaatccaagcttaaaggtgctgttttcgcctactaatcgcata
ggtggcgagattttagatcagtttgagaagttagctcataaggctagaatgtggtctatg
gaggatatttttagcgatgatgagcttttagcgtggattgagcgtggagataaggggtcg
caaagattttttgtagagcctaaatttgatggtgcgagtttgaatttaacatatgaaaat
ggaattttaaaaagtgctgccacaaggggagatggagagattggcgaggatgttaccaat
aatgctaaggtgattagctctattcctttaaagattccttatgatggatttatcgagatt
aggggcgaagtggttatcgctaaaaaggattttgaagagattaatgctaagagaattcaa
gatgggcttaatttactagccaatcctagaaacgcagctgctggtagcttaagacagctt
gatccaagtataactaaatctagaaggcttaaattctatccgtggggagtgggggcaaat
gagcttaaatttgccacacatagccaaatgatggagtttgtaagatctcttggattttta
agagatgattttattagggtttgtaatagcgtagatgaggttaaaaatgcctactctaaa
ctcttattgctaagagatgagaagcctataatgatggatggtatggtagttcgcattgat
agccttgctaagtgcgatgagctaggatttacggttaaatttcctaaatttatggtagct
tataaattcccagctacgcaaaagagcgctaaattactagatatagctttacaagtaggt
agaactggcgtggttactcctgttggtattcttgatggggtggagattgatggggctttt
gtaagaaatgtaaccttacataacttcgatgagatagagcgtctagggcttatgaagggt
gatatggtctgcgtaattagaagtggagatgtgatacctaagattacagatgtgtataaa
agcagaagagatggcacccaatctaatatagagcgtccgactaactgccctaagtgtggt
agtgagcttttagatgaaggggtatttataaagtgtcaaaatttgagttgtaaggctagg
gtggtaagctcgattatatattttgcttctaaaaagtgtatgaatatcgatggtcttggc
gatgctattatagagcttttatatgaaaatggcaaaatatcaagtataattgatatttat
agattagataggggtagctttaatggtttagagggctttaaggataaaaagatagataat
atcctaaatgccataaatataagcaaaaccccaccacttcatagatttatcacatcttta
gggattgagcatattggcgaagtagcagcaaaaaagatagcctcaacctatccaaataat
tggctaaatttaaatcaagatgagcttttaagccttgatggatttggcgaggcgatggca
cttagctatttggagtttatgcgtgttaattatgataaaattattgagcttatggagttt
gtaaagcctaaaattgaagatattaaatttactcaaaatatatttagtggtaaaactata
gttataactggcaccctttctcgtcctagagatgagataaaaaaagagctagagagcttt
ggggctaaggttagtagctctgtatcatctaagagtgattatctactaagtggggaatca
agcggaagtaaatatgataaagccatatctttaggggttaaaatcatcgatgaaaaagag
tatgaaagattgataaatgagggctga
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